RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 CYP2U1Q7Z449 544 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 ADAMTS15Q8TE58 950 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 CAMK1GQ96NX5 476 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 TIMM29Q9BSF4 260 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 FAM72CH0Y354 149 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 SUV39H1O43463 412 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 EN2P19622 333 aaPredicted RBP13.37□□□□□ -0.27
LDLR-201ENST00000252444 TCN1P20061 433 aaPredicted RBP13.37□□□□□ -0.27
LDLR-201ENST00000252444 HNRNPA2B1P22626 353 aaKnown RBP13.37□□□□□ -0.27
LDLR-201ENST00000252444 MLLT3P42568 568 aaPredicted RBP13.37□□□□□ -0.27
LDLR-201ENST00000252444 ABCG1P45844 678 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 FAM72AQ5TYM5 149 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 FAM72DQ6L9T8 149 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 FAM72BQ86X60 149 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 ATG16L2Q8NAA4 619 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 GDPD5Q8WTR4 605 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 RMDN2Q96LZ7 410 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 ADAM30Q9UKF2 790 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 OR1F1O43749 312 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 ATP6V1B2P21281 511 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 ALDH6A1Q02252 535 aaKnown RBP13.37□□□□□ -0.27
LDLR-201ENST00000252444 NCF4Q15080 339 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 SLC5A9Q2M3M2 681 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 PAQR3Q6TCH7 311 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 PAQR9Q6ZVX9 377 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 ZNF689Q96CS4 500 aaPredicted RBP13.37□□□□□ -0.27
LDLR-201ENST00000252444 VPS29Q9UBQ0 182 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 C3orf18Q9UK00 162 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 A8MT66 165 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 MPSTP25325 297 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 TPP2P29144 1249 aaPredicted RBP13.37□□□□□ -0.27
LDLR-201ENST00000252444 CDC42P60953 191 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 RUNX1T1Q06455 604 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 FRG2Q64ET8 278 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 THOC6Q86W42 341 aaKnown RBP13.37□□□□□ -0.27
LDLR-201ENST00000252444 SLC38A2Q96QD8 506 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 FRG2BQ96QU4 278 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 CCNB1IP1Q9NPC3 277 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 FZD4Q9ULV1 537 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 ZNF236Q9UL36 1845 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 TCRBV5S1A1TA0A578 114 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 OR6A2O95222 327 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 AHSGP02765 367 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 MAGEA10P43363 369 aaPredicted RBP13.36□□□□□ -0.27
LDLR-201ENST00000252444 NME5P56597 212 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 FBXW8Q8N3Y1 598 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 C11orf65Q8NCR3 313 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 PIWIL1Q96J94 861 aaKnown RBP13.36□□□□□ -0.27
LDLR-201ENST00000252444 HCFC2Q9Y5Z7 792 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 AGPSO00116 658 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 HTRA4P83105 476 aaPredicted RBP13.36□□□□□ -0.27
LDLR-201ENST00000252444 NFKB2Q00653 900 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 LGALS3BPQ08380 585 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 KIF2BQ8N4N8 673 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 IFT80Q9P2H3 777 aaPredicted RBP13.36□□□□□ -0.27
LDLR-201ENST00000252444 LOC285095A0A1B0GVY8 99 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 FAM92AA1XBS5 289 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 FAM221BA6H8Z2 402 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 UBXN8O00124 270 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 HNRNPLP14866 589 aaKnown RBP eCLIP13.36□□□□□ -0.27
LDLR-201ENST00000252444 CDKL1Q00532 357 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 C2orf80Q0P641 193 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 CNTN4Q8IWV2 1026 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 SVOPLQ8N434 492 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 ZNF347Q96SE7 839 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 UNKQ9C0B0 810 aaKnown RBP13.36□□□□□ -0.27
LDLR-201ENST00000252444 ZNF576Q9H609 170 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 BTRCQ9Y297 605 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 SEMA4FO95754 770 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 CYP17A1P05093 508 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 EIF2S1P05198 315 aaKnown RBP13.36□□□□□ -0.27
LDLR-201ENST00000252444 CAPN1P07384 714 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 ABCB1P08183 1280 aaPredicted RBP13.36□□□□□ -0.27
LDLR-201ENST00000252444 ACP5P13686 325 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 EPORP19235 508 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 MPIP34949 423 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 UGT2B15P54855 530 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 RPS15AP62244 130 aaKnown RBP13.36□□□□□ -0.27
LDLR-201ENST00000252444 FAM214AQ32MH5 1076 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 OR56A1Q8NGH5 318 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 FGF13Q92913 245 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 RTP3Q9BQQ7 232 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 ACTL8Q9H568 366 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 EPHX3Q9H6B9 360 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 EIF2B4Q9UI10 523 aaKnown RBP13.36□□□□□ -0.27
LDLR-201ENST00000252444 AP1M2Q9Y6Q5 423 aa13.36□□□□□ -0.27
LDLR-201ENST00000252444 GSNP06396 782 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 ZNF37AP17032 561 aaPredicted RBP13.35□□□□□ -0.27
LDLR-201ENST00000252444 TRMT10BQ6PF06 316 aaKnown RBP13.35□□□□□ -0.27
LDLR-201ENST00000252444 PNPOQ9NVS9 261 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 DNMT3BQ9UBC3 853 aaKnown RBP13.35□□□□□ -0.27
LDLR-201ENST00000252444 DGKBQ9Y6T7 804 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 MPZL2O60487 215 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 UBALD2Q8IYN6 164 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 OR2T12Q8NG77 320 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 PCED1AQ9H1Q7 454 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 EPB41L4BQ9H329 900 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 R3HDMLQ9H3Y0 253 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 SPATA6Q9NWH7 488 aaPredicted RBP13.35□□□□□ -0.27
LDLR-201ENST00000252444 CACNA2D2Q9NY47 1150 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms