RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 PPP2CAP67775 309 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 DDX39BQ13838 428 aaKnown RBP8.49□□□□□ -1.05
VPS4B-201ENST00000238497 WLSQ5T9L3 541 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 AMIGO2Q86SJ2 522 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 SERPINA9Q86WD7 417 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 FBXW8Q8N3Y1 598 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 CLHC1Q8NHS4 586 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 METTL6Q8TCB7 284 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 FRS2Q8WU20 508 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 DNASE2BQ8WZ79 361 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 PYCR2Q96C36 320 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 AARSD1Q9BTE6 412 aaKnown RBP8.49□□□□□ -1.05
VPS4B-201ENST00000238497 AKTIPQ9H8T0 292 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 IKZF3Q9UKT9 509 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 CAPN8A6NHC0 703 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 ANGPT2O15123 496 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 H2AFYO75367 372 aaKnown RBP8.48□□□□□ -1.05
VPS4B-201ENST00000238497 CER1O95813 267 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 S100BP04271 92 aaPredicted RBP8.48□□□□□ -1.05
VPS4B-201ENST00000238497 CD1DP15813 335 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 CPOXP36551 454 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 LIMK1P53667 647 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 PRKAA2P54646 552 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 ACTR3P61158 418 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 CLCQ05315 142 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 TBCCQ15814 346 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 UNC50Q53HI1 259 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 ZNF648Q5T619 568 aaPredicted RBP8.48□□□□□ -1.05
VPS4B-201ENST00000238497 ACBD5Q5T8D3 534 aaPredicted RBP8.48□□□□□ -1.05
VPS4B-201ENST00000238497 AFTPHQ6ULP2 937 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 NET1Q7Z628 596 aaPredicted RBP8.48□□□□□ -1.05
VPS4B-201ENST00000238497 GATAD2AQ86YP4 633 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 SLC22A9Q8IVM8 553 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 FNDC5Q8NAU1 212 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 OR2A12Q8NGT7 310 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 RDH11Q8TC12 318 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 TWIST2Q8WVJ9 160 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 ULK4Q96C45 1275 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 C19orf60Q96EN9 201 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 PPP1R16AQ96I34 528 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 CNDP1Q96KN2 507 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 HEPHQ9BQS7 1158 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 CXorf56Q9H5V9 222 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 ARNT2Q9HBZ2 717 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 VTI1BQ9UEU0 232 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 IL36AQ9UHA7 158 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 HS3ST2Q9Y278 367 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 OR51B4Q9Y5P0 310 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 SNX13Q9Y5W8 968 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 SPEGQ15772 3267 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 ZFYVE26Q68DK2 2539 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 A0A1W2PQU0 124 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 MROH6A6NGR9 719 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 AZIN1O14977 448 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 MAGEC1O60732 1142 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 CDK14O94921 469 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 CHEK2O96017 543 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 MAGEA12P43365 314 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 MS4A2Q01362 244 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 NRG1Q02297 640 aaPredicted RBP8.48□□□□□ -1.05
VPS4B-201ENST00000238497 TAF1AQ15573 450 aaPredicted RBP8.48□□□□□ -1.05
VPS4B-201ENST00000238497 CARD16Q5EG05 197 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 ZNF678Q5SXM1 525 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 IL27RAQ6UWB1 636 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 C16orf89Q6UX73 402 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 KBTBD2Q8IY47 623 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 OR52B6Q8NGF0 335 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 CCDC126Q96EE4 140 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 NOL11Q9H8H0 719 aaKnown RBP8.48□□□□□ -1.05
VPS4B-201ENST00000238497 SLC24A3Q9HC58 644 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 PFDN4Q9NQP4 134 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 KIAA1549LQ6ZVL6 1849 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 ADAMTS9Q9P2N4 1935 aa8.48□□□□□ -1.05
VPS4B-201ENST00000238497 E7ENX8 843 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 ADRB1P08588 477 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 IMPDH1P20839 514 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 HMOX2P30519 316 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 DRD3P35462 400 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 SLC7A2P52569 658 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 PSME3P61289 254 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 SNRPD1P62314 119 aaKnown RBP8.47□□□□□ -1.05
VPS4B-201ENST00000238497 KLC1Q07866 573 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 CHRNA6Q15825 494 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.47□□□□□ -1.05
VPS4B-201ENST00000238497 SCAMP4Q969E2 229 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 GFM2Q969S9 779 aaKnown RBP8.47□□□□□ -1.05
VPS4B-201ENST00000238497 MGME1Q9BQP7 344 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 WWOXQ9NZC7 414 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 STX18Q9P2W9 335 aaKnown RBP8.47□□□□□ -1.05
VPS4B-201ENST00000238497 ZNF212Q9UDV6 495 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 ASB1Q9Y576 335 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 DNAJC15Q9Y5T4 150 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 A0A1W2PPC4 97 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 OR2AG2A6NM03 316 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 UPK3BL1B0FP48 263 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 UPK3BL2E5RIL1 263 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 H0Y8X5 98 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 INPP4BO15327 924 aa8.47□□□□□ -1.05
VPS4B-201ENST00000238497 RNGTTO60942 597 aaKnown RBP8.47□□□□□ -1.05
VPS4B-201ENST00000238497 SDC3O75056 442 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms