RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 DSELQ8IZU8 1212 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 RP9Q8TA86 221 aaKnown RBP15.4■□□□□ 0.06
CPSF1-213ENST00000620219 N4BP2L2Q92802 583 aaPredicted RBP15.4■□□□□ 0.06
CPSF1-213ENST00000620219 ISL2Q96A47 359 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 CENPKQ9BS16 269 aa15.4■□□□□ 0.06
CPSF1-213ENST00000620219 CARS2Q9HA77 564 aaKnown RBP15.4■□□□□ 0.06
CPSF1-213ENST00000620219 CCDC189A1A4V9 331 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 LMNAP02545 664 aaKnown RBP15.39■□□□□ 0.05
CPSF1-213ENST00000620219 GM2AP17900 193 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 HTR1BP28222 390 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 DNAJB13P59910 316 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 SLC14A2Q15849 920 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 WASHC2DQ5SRD0 308 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 METTL21CQ5VZV1 264 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 ENPP7Q6UWV6 458 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 SYVN1Q86TM6 617 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 HID1Q8IV36 788 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 GNGT2O14610 69 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 C8GP07360 202 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 EFNA1P20827 205 aaPredicted RBP15.39■□□□□ 0.05
CPSF1-213ENST00000620219 MAPK9P45984 424 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 ALDH9A1P49189 494 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 KANSL1LA0AUZ9 987 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 DIO3P55073 304 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 ACVR1Q04771 509 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 NFE2L1Q14494 772 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 CBARPQ8N350 705 aaPredicted RBP15.39■□□□□ 0.05
CPSF1-213ENST00000620219 C12orf66Q96MD2 445 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 ATOH8Q96SQ7 321 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 EFHD1Q9BUP0 239 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 GSTO2Q9H4Y5 243 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 DOCK4Q8N1I0 1966 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 CHD7Q9P2D1 2997 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 K7ESM1 405 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 CTSEP14091 401 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 TPD52P55327 224 aaPredicted RBP15.39■□□□□ 0.05
CPSF1-213ENST00000620219 PSME3P61289 254 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 TRMT5Q32P41 509 aaKnown RBP15.39■□□□□ 0.05
CPSF1-213ENST00000620219 SYT12Q8IV01 421 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 TBCDQ9BTW9 1192 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 CCDC28BQ9BUN5 200 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 EBPLQ9BY08 206 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 SGK2Q9HBY8 427 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 DNAJC15Q9Y5T4 150 aa15.39■□□□□ 0.05
CPSF1-213ENST00000620219 AOC1P19801 751 aa15.38■□□□□ 0.05
CPSF1-213ENST00000620219 ITGB7P26010 798 aa15.38■□□□□ 0.05
CPSF1-213ENST00000620219 GRB7Q14451 532 aa15.38■□□□□ 0.05
CPSF1-213ENST00000620219 IL17FQ96PD4 163 aa15.38■□□□□ 0.05
CPSF1-213ENST00000620219 TCRBV21S2A2A0A5A6 115 aa15.38■□□□□ 0.05
CPSF1-213ENST00000620219 OR10G6Q8NH81 332 aa15.38■□□□□ 0.05
CPSF1-213ENST00000620219 RPLP0P6Q8NHW5 317 aa15.38■□□□□ 0.05
CPSF1-213ENST00000620219 NECTIN4Q96NY8 510 aa15.38■□□□□ 0.05
CPSF1-213ENST00000620219 FAM83CQ9BQN1 747 aa15.38■□□□□ 0.05
CPSF1-213ENST00000620219 TMCO1Q9UM00 188 aa15.38■□□□□ 0.05
CPSF1-213ENST00000620219 ITGAXP20702 1163 aa15.38■□□□□ 0.05
CPSF1-213ENST00000620219 PDHA2P29803 388 aa15.38■□□□□ 0.05
CPSF1-213ENST00000620219 CAPN13Q6MZZ7 669 aaPredicted RBP15.38■□□□□ 0.05
CPSF1-213ENST00000620219 FAM217AQ8IXS0 508 aa15.38■□□□□ 0.05
CPSF1-213ENST00000620219 VCXQ9H320 206 aa15.38■□□□□ 0.05
CPSF1-213ENST00000620219 IKZF3Q9UKT9 509 aa15.38■□□□□ 0.05
CPSF1-213ENST00000620219 ZDBF2Q9HCK1 2354 aa15.38■□□□□ 0.05
CPSF1-213ENST00000620219 ISM1B1AKI9 464 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 SAP18O00422 153 aaKnown RBP15.37■□□□□ 0.05
CPSF1-213ENST00000620219 NRP2O60462 931 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 P2RY2P41231 377 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 DGKEP52429 567 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 SLC7A2P52569 658 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 NFKB2Q00653 900 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 SLC30A9Q6PML9 568 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 MAGEC3Q8TD91 643 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 HIC2Q96JB3 615 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 EGFL7Q9UHF1 273 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 AK5Q9Y6K8 562 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 UNC80Q8N2C7 3258 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 CAPN14A8MX76 684 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 H0Y858 1186 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 SLC22A3O75751 556 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 STATHP02808 62 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 LINC00271P0C7V0 271 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 SOAT1P35610 550 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 MEF2AQ02078 507 aaPredicted RBP15.37■□□□□ 0.05
CPSF1-213ENST00000620219 GALNT4Q8N4A0 578 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 DNAJC9Q8WXX5 260 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 TFGQ92734 400 aaPredicted RBP15.37■□□□□ 0.05
CPSF1-213ENST00000620219 TMEM245Q9H330 911 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 SYNDIG1Q9H7V2 258 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 MRGBPQ9NV56 204 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 BAG5Q9UL15 447 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 VPS4BO75351 444 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 HTR6P50406 440 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 HK2P52789 917 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 C9orf64Q5T6V5 341 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 AGTRAPQ6RW13 159 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 DPPA4Q7L190 304 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 LRRTM4Q86VH4 590 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 CXorf40BQ96DE9 158 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 PPP3R2Q96LZ3 170 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 C3orf30Q96M34 536 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 TPSD1Q9BZJ3 242 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 BTBD1Q9H0C5 482 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms