RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 EVA1BQ9NVM1 165 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 DLL3Q9NYJ7 618 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 CTNNAL1Q9UBT7 734 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 RUVBL2Q9Y230 463 aaKnown RBP19.22■□□□□ 0.67
UPF3A-211ENST00000618700 PLAAQ9Y263 795 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 TRIM49D1C9J1S8 452 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 PPM1DO15297 605 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 TNFSF14O43557 240 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 KRT37O76014 449 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 VIPP01282 170 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 SLC35E2BP0CK96 405 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 PNLIPP16233 465 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 SDHBP21912 280 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 CRABP2P29373 138 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 DUSP3P51452 185 aaPredicted RBP19.21■□□□□ 0.67
UPF3A-211ENST00000618700 IL2P60568 153 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 DAB2P98082 770 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 ABRQ12979 859 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 DNAJC3Q13217 504 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 TBC1D21Q8IYX1 336 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 IQCKQ8N0W5 287 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 NKAPQ8N5F7 415 aaKnown RBP19.21■□□□□ 0.67
UPF3A-211ENST00000618700 OR5AR1Q8NGP9 310 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 OR5K2Q8NHB8 316 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 MZB1Q8WU39 189 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 ANKRD49Q8WVL7 239 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 NAT6Q93015 286 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 MTBPQ96DY7 904 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 PDLIM5Q96HC4 596 aaKnown RBP19.21■□□□□ 0.67
UPF3A-211ENST00000618700 TMEM109Q9BVC6 243 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 MVB12BQ9H7P6 319 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 SYTL2Q9HCH5 934 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 GPAMQ9HCL2 828 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 LRIT1Q9P2V4 623 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 TSR3Q9UJK0 312 aaKnown RBP19.21■□□□□ 0.67
UPF3A-211ENST00000618700 ASF1AQ9Y294 204 aa19.21■□□□□ 0.67
UPF3A-211ENST00000618700 LILRA5A6NI73 299 aa19.2■□□□□ 0.66
UPF3A-211ENST00000618700 CDH16O75309 829 aa19.2■□□□□ 0.66
UPF3A-211ENST00000618700 PSIP1O75475 530 aaKnown RBP19.2■□□□□ 0.66
UPF3A-211ENST00000618700 MAPK9P45984 424 aa19.2■□□□□ 0.66
UPF3A-211ENST00000618700 SLCO1A2P46721 670 aa19.2■□□□□ 0.66
UPF3A-211ENST00000618700 ACADVLP49748 655 aa19.2■□□□□ 0.66
UPF3A-211ENST00000618700 GPR18Q14330 331 aa19.2■□□□□ 0.66
UPF3A-211ENST00000618700 PERM1Q5SV97 790 aa19.2■□□□□ 0.66
UPF3A-211ENST00000618700 LGSNQ5TDP6 509 aa19.2■□□□□ 0.66
UPF3A-211ENST00000618700 TIFABQ6ZNK6 161 aa19.2■□□□□ 0.66
UPF3A-211ENST00000618700 CCDC91Q7Z6B0 441 aa19.2■□□□□ 0.66
UPF3A-211ENST00000618700 MYO1HQ8N1T3 1032 aa19.2■□□□□ 0.66
UPF3A-211ENST00000618700 PHC3Q8NDX5 983 aa19.2■□□□□ 0.66
UPF3A-211ENST00000618700 SKA2Q8WVK7 121 aaPredicted RBP19.2■□□□□ 0.66
UPF3A-211ENST00000618700 ZFPM2Q8WW38 1151 aa19.2■□□□□ 0.66
UPF3A-211ENST00000618700 ASB11Q8WXH4 323 aa19.2■□□□□ 0.66
UPF3A-211ENST00000618700 CCDC74AQ96AQ1 378 aa19.2■□□□□ 0.66
UPF3A-211ENST00000618700 UBXN10Q96LJ8 280 aa19.2■□□□□ 0.66
UPF3A-211ENST00000618700 SLC32A1Q9H598 525 aa19.2■□□□□ 0.66
UPF3A-211ENST00000618700 KIR3DX1Q9H7L2 352 aa19.2■□□□□ 0.66
UPF3A-211ENST00000618700 COLEC10Q9Y6Z7 277 aa19.2■□□□□ 0.66
UPF3A-211ENST00000618700 RHPN2P1A8MT19 583 aa19.19■□□□□ 0.66
UPF3A-211ENST00000618700 GFYI3L273 518 aa19.19■□□□□ 0.66
UPF3A-211ENST00000618700 C1orf105O95561 183 aa19.19■□□□□ 0.66
UPF3A-211ENST00000618700 GPR3P46089 330 aa19.19■□□□□ 0.66
UPF3A-211ENST00000618700 IFFO1Q0D2I5 559 aa19.19■□□□□ 0.66
UPF3A-211ENST00000618700 PUM1Q14671 1186 aaKnown RBP eCLIP19.19■□□□□ 0.66
UPF3A-211ENST00000618700 FBXO38Q6PIJ6 1188 aa19.19■□□□□ 0.66
UPF3A-211ENST00000618700 TMEM26Q6ZUK4 368 aa19.19■□□□□ 0.66
UPF3A-211ENST00000618700 EFL1Q7Z2Z2 1120 aaKnown RBP19.19■□□□□ 0.66
UPF3A-211ENST00000618700 DCUN1D3Q8IWE4 304 aa19.19■□□□□ 0.66
UPF3A-211ENST00000618700 RIBC1Q8N443 379 aaPredicted RBP19.19■□□□□ 0.66
UPF3A-211ENST00000618700 IFI44Q8TCB0 444 aa19.19■□□□□ 0.66
UPF3A-211ENST00000618700 SH3KBP1Q96B97 665 aa19.19■□□□□ 0.66
UPF3A-211ENST00000618700 FOPNLQ96NB1 174 aa19.19■□□□□ 0.66
UPF3A-211ENST00000618700 FERD3LQ96RJ6 166 aa19.19■□□□□ 0.66
UPF3A-211ENST00000618700 HGH1Q9BTY7 390 aa19.19■□□□□ 0.66
UPF3A-211ENST00000618700 ROPN1BQ9BZX4 212 aaPredicted RBP19.19■□□□□ 0.66
UPF3A-211ENST00000618700 TRIT1Q9H3H1 467 aaKnown RBP19.19■□□□□ 0.66
UPF3A-211ENST00000618700 ROPN1Q9HAT0 212 aaPredicted RBP19.19■□□□□ 0.66
UPF3A-211ENST00000618700 ARGLU1Q9NWB6 273 aaPredicted RBP19.19■□□□□ 0.66
UPF3A-211ENST00000618700 TOR4AQ9NXH8 423 aa19.19■□□□□ 0.66
UPF3A-211ENST00000618700 PCNX2A6NKB5 2137 aa19.19■□□□□ 0.66
UPF3A-211ENST00000618700 IQANK1A0A1B0GTG1 560 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 CPED1A4D0V7 1026 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 SMIM23A6NLE4 172 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 ARHGEF33A8MVX0 844 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 RASGRF2O14827 1237 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 RFPL1O75677 317 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 RPN2P04844 631 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 C2P06681 752 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 GP1BAP07359 652 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 TYK2P29597 1187 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 SLC26A3P40879 764 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 ZNF844Q08AG5 666 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 SP140Q13342 867 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 TRIP6Q15654 476 aaKnown RBP19.18■□□□□ 0.66
UPF3A-211ENST00000618700 RAPH1Q70E73 1250 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 ZNF761Q86XN6 746 aaPredicted RBP19.18■□□□□ 0.66
UPF3A-211ENST00000618700 FBXO15Q8NCQ5 510 aaPredicted RBP19.18■□□□□ 0.66
UPF3A-211ENST00000618700 CFAP61Q8NHU2 1237 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 ANKRD7Q92527 254 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 RTKNQ9BST9 563 aa19.18■□□□□ 0.66
UPF3A-211ENST00000618700 LDHAL6BQ9BYZ2 381 aaPredicted RBP19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms