RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	VPS4B	O75351	444 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	AP2A2	O94973	939 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	SOD1	P00441	154 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	JUN	P05412	331 aa	Known RBP	11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	C8B	P07358	591 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	ATP1B2	P14415	290 aa	Predicted RBP	11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	ZNF37A	P17032	561 aa	Predicted RBP	11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	PEX2	P28328	305 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	CEACAM7	Q14002	265 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	WSCD2	Q2TBF2	565 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	TMEM259	Q4ZIN3	620 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	SFT2D3	Q587I9	215 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	ZNF678	Q5SXM1	525 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	PAQR3	Q6TCH7	311 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	TMEM207	Q6UWW9	146 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	LARP4	Q71RC2	724 aa	Known RBP eCLIP	11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	RAB44	Q7Z6P3	723 aa	Predicted RBP	11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	HORMAD1	Q86X24	394 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	CLYBL	Q8N0X4	340 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	NKAP	Q8N5F7	415 aa	Known RBP	11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	GOLM1	Q8NBJ4	401 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	TSPEAR	Q8WU66	669 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	ZFAND2B	Q8WV99	257 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	CLDN23	Q96B33	292 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	ROPN1L	Q96C74	230 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	CCDC97	Q96F63	343 aa	Predicted RBP	11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	LRGUK	Q96M69	825 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	TSC22D3	Q99576	134 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	CENPK	Q9BS16	269 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	ZCCHC2	Q9C0B9	1178 aa	Known RBP	11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	TFB2M	Q9H5Q4	396 aa	Known RBP	11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	SGK2	Q9HBY8	427 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	TMEM45A	Q9NWC5	275 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	MUTYH	Q9UIF7	546 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	TMCO1	Q9UM00	188 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	ZFR2	Q9UPR6	939 aa	Known RBP	11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	DHRS7	Q9Y394	339 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	DTNA	Q9Y4J8	743 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	TRAF6	Q9Y4K3	522 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	PRSS21	Q9Y6M0	314 aa		11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	ZNF106	Q9H2Y7	1883 aa	Known RBP	11.46	□□□□□ -0.57
VRK3-223	ENST00000601341	LRRC72	A6NJI9	287 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	IQCF5	A8MTL0	148 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341		K7ESM1	405 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	PSMD12	O00232	456 aa	Predicted RBP	11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	INPP4B	O15327	924 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	MTX2	O75431	263 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	TRIM16	O95361	564 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	PAK4	O96013	591 aa	Predicted RBP	11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	SNRPB2	P08579	225 aa	Known RBP	11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	CCR10	P46092	362 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	CLCN7	P51798	805 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	GRIK2	Q13002	908 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	LRP8	Q14114	963 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	TRIM25	Q14258	630 aa	Known RBP	11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	MMEL1	Q495T6	779 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	COQ5	Q5HYK3	327 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	TMEM198	Q66K66	360 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	C8orf82	Q6P1X6	216 aa	Predicted RBP	11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	PNCK	Q6P2M8	343 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	ADAMTSL4	Q6UY14	1074 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	SPATA6L	Q8N4H0	392 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	SPEM1	Q8N4L4	309 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	SIDT2	Q8NBJ9	832 aa	Known RBP	11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	PJA1	Q8NG27	643 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	OR2T34	Q8NGX1	318 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	CD200R1	Q8TD46	325 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	ANKRD49	Q8WVL7	239 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	ASB12	Q8WXK4	309 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	GBP5	Q96PP8	586 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	SLC17A9	Q9BYT1	436 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	SARS2	Q9NP81	518 aa	Known RBP	11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	SPAG4	Q9NPE6	437 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	USP36	Q9P275	1121 aa	Known RBP	11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	KLHL42	Q9P2K6	505 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	GALP	Q9UBC7	116 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	EBF1	Q9UH73	591 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	RIMS3	Q9UJD0	308 aa		11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	CNOT6	Q9ULM6	557 aa	Known RBP	11.46	□□□□□ -0.58
VRK3-223	ENST00000601341	GPC4	O75487	556 aa		11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	SORBS2	O94875	1100 aa	Known RBP	11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	IGLV3-19	P01714	112 aa		11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	ENO3	P13929	434 aa	Predicted RBP	11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	CD1D	P15813	335 aa		11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	XRCC1	P18887	633 aa	Predicted RBP	11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	TEAD1	P28347	426 aa		11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	ACSL1	P33121	698 aa		11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	RPS9	P46781	194 aa	Known RBP	11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	CHN2	P52757	468 aa		11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	AQP4	P55087	323 aa		11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	IL2	P60568	153 aa		11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	PSME3	P61289	254 aa		11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	ATP6V0D1	P61421	351 aa		11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	TMEM115	Q12893	351 aa	Predicted RBP	11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	FASTK	Q14296	549 aa	Known RBP	11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	SAMD4B	Q5PRF9	694 aa	Known RBP	11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	PRMT9	Q6P2P2	845 aa		11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	DET1	Q7L5Y6	550 aa		11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	HOMEZ	Q8IX15	550 aa		11.45	□□□□□ -0.58
VRK3-223	ENST00000601341	PCYOX1L	Q8NBM8	494 aa		11.45	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms