RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 SAMSN1Q9NSI8 373 aaKnown RBP15.52■□□□□ 0.08
VPS53-218ENST00000575207 HPSEQ9Y251 543 aa15.52■□□□□ 0.08
VPS53-218ENST00000575207 CFAP20Q9Y6A4 193 aaKnown RBP15.52■□□□□ 0.08
VPS53-218ENST00000575207 NSG1A0A0A6YYJ2 146 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 VSTM2BA6NLU5 285 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 MAP2K7O14733 419 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 SPRY1O43609 319 aaPredicted RBP15.51■□□□□ 0.07
VPS53-218ENST00000575207 WFS1O76024 890 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 PIM1P11309 404 aaPredicted RBP15.51■□□□□ 0.07
VPS53-218ENST00000575207 PEX19P40855 299 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 NSG1P42857 185 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 TMPRSS15P98073 1019 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 XRCC4Q13426 336 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 DAZAP2Q15038 168 aaPredicted RBP15.51■□□□□ 0.07
VPS53-218ENST00000575207 KHDC1Q4VXA5 237 aaKnown RBP15.51■□□□□ 0.07
VPS53-218ENST00000575207 VWA3BQ502W6 1294 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 ABHD17BQ5VST6 288 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 COX15Q7KZN9 410 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 NDUFAF7Q7L592 441 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 CD163Q86VB7 1156 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 AMZ2Q86W34 360 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 PAQR7Q86WK9 346 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 P3H2Q8IVL5 708 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 ULK2Q8IYT8 1036 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 INSM2Q96T92 566 aaPredicted RBP15.51■□□□□ 0.07
VPS53-218ENST00000575207 SPATA16Q9BXB7 569 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 TAS2R14Q9NYV8 317 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 APEX2Q9UBZ4 518 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 CBLCQ9ULV8 474 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 MGAM2Q2M2H8 2515 aa15.51■□□□□ 0.07
VPS53-218ENST00000575207 C1orf232A0A0U1RR37 186 aa15.5■□□□□ 0.07
VPS53-218ENST00000575207 A0A1W2PQ72 361 aa15.5■□□□□ 0.07
VPS53-218ENST00000575207 COX6A1P12074 109 aa15.5■□□□□ 0.07
VPS53-218ENST00000575207 BMP7P18075 431 aa15.5■□□□□ 0.07
VPS53-218ENST00000575207 CMA1P23946 247 aa15.5■□□□□ 0.07
VPS53-218ENST00000575207 SYKP43405 635 aa15.5■□□□□ 0.07
VPS53-218ENST00000575207 AIF1P55008 147 aa15.5■□□□□ 0.07
VPS53-218ENST00000575207 DEFB110Q30KQ9 67 aa15.5■□□□□ 0.07
VPS53-218ENST00000575207 KRTAP24-1Q3LI83 254 aa15.5■□□□□ 0.07
VPS53-218ENST00000575207 ANKRD20A8PQ5CZ79 823 aa15.5■□□□□ 0.07
VPS53-218ENST00000575207 TXNRD3NBQ6F5E7 133 aa15.5■□□□□ 0.07
VPS53-218ENST00000575207 SCYL2Q6P3W7 929 aa15.5■□□□□ 0.07
VPS53-218ENST00000575207 FAM83HQ6ZRV2 1179 aaPredicted RBP15.5■□□□□ 0.07
VPS53-218ENST00000575207 TRAPPC5Q8IUR0 188 aa15.5■□□□□ 0.07
VPS53-218ENST00000575207 TRIM59Q8IWR1 403 aa15.5■□□□□ 0.07
VPS53-218ENST00000575207 NPWQ8N729 165 aa15.5■□□□□ 0.07
VPS53-218ENST00000575207 C8orf44Q96CB5 159 aa15.5■□□□□ 0.07
VPS53-218ENST00000575207 NUP85Q9BW27 656 aa15.5■□□□□ 0.07
VPS53-218ENST00000575207 MPDZO75970 2070 aa15.5■□□□□ 0.07
VPS53-218ENST00000575207 PHF3Q92576 2039 aaKnown RBP15.5■□□□□ 0.07
VPS53-218ENST00000575207 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.49■□□□□ 0.078e-6■■□□□ 12.9
VPS53-218ENST00000575207 TRIM64A6NGJ6 449 aa15.49■□□□□ 0.07
VPS53-218ENST00000575207 TRIM64BA6NI03 449 aa15.49■□□□□ 0.07
VPS53-218ENST00000575207 UQCRHP07919 91 aa15.49■□□□□ 0.07
VPS53-218ENST00000575207 ALAS2P22557 587 aa15.49■□□□□ 0.07
VPS53-218ENST00000575207 PTGS2P35354 604 aa15.49■□□□□ 0.07
VPS53-218ENST00000575207 CARSP49589 748 aaKnown RBP15.49■□□□□ 0.07
VPS53-218ENST00000575207 APBA1Q02410 837 aa15.49■□□□□ 0.07
VPS53-218ENST00000575207 SNTB1Q13884 538 aaKnown RBP15.49■□□□□ 0.07
VPS53-218ENST00000575207 ATP13A4Q4VNC1 1196 aa15.49■□□□□ 0.07
VPS53-218ENST00000575207 BBS5Q8N3I7 341 aa15.49■□□□□ 0.07
VPS53-218ENST00000575207 RPRMLQ8N4K4 120 aa15.49■□□□□ 0.07
VPS53-218ENST00000575207 TRAM1L1Q8N609 369 aa15.49■□□□□ 0.07
VPS53-218ENST00000575207 MDS2Q8NDY4 140 aa15.49■□□□□ 0.07
VPS53-218ENST00000575207 CCHCR1Q8TD31 782 aa15.49■□□□□ 0.07
VPS53-218ENST00000575207 FAM222BQ8WU58 562 aa15.49■□□□□ 0.07
VPS53-218ENST00000575207 SCMH1Q96GD3 660 aa15.49■□□□□ 0.07
VPS53-218ENST00000575207 KCTD15Q96SI1 283 aaPredicted RBP15.49■□□□□ 0.07
VPS53-218ENST00000575207 CRACR2AQ9BSW2 395 aa15.49■□□□□ 0.07
VPS53-218ENST00000575207 TP63Q9H3D4 680 aaPredicted RBP15.49■□□□□ 0.07
VPS53-218ENST00000575207 CTSFQ9UBX1 484 aa15.49■□□□□ 0.07
VPS53-218ENST00000575207 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.49■□□□□ 0.07
VPS53-218ENST00000575207 A0A1B0GX78 115 aa15.48■□□□□ 0.07
VPS53-218ENST00000575207 BTN3A3O00478 584 aa15.48■□□□□ 0.07
VPS53-218ENST00000575207 LSM8O95777 96 aaKnown RBP15.48■□□□□ 0.07
VPS53-218ENST00000575207 PRLP01236 227 aa15.48■□□□□ 0.07
VPS53-218ENST00000575207 PNMA6AP0CW24 399 aaPredicted RBP15.48■□□□□ 0.07
VPS53-218ENST00000575207 EEF1DP29692 281 aaKnown RBP15.48■□□□□ 0.07
VPS53-218ENST00000575207 BPIFB4P59827 614 aa15.48■□□□□ 0.07
VPS53-218ENST00000575207 DCDC1P59894 354 aa15.48■□□□□ 0.07
VPS53-218ENST00000575207 PMPCAQ10713 525 aa15.48■□□□□ 0.07
VPS53-218ENST00000575207 CAMK4Q16566 473 aa15.48■□□□□ 0.07
VPS53-218ENST00000575207 FLYWCH1Q4VC44 716 aa15.48■□□□□ 0.07
VPS53-218ENST00000575207 ZNF658Q5TYW1 1059 aaPredicted RBP15.48■□□□□ 0.07
VPS53-218ENST00000575207 METRNLQ641Q3 311 aa15.48■□□□□ 0.07
VPS53-218ENST00000575207 ACAD11Q709F0 780 aa15.48■□□□□ 0.07
VPS53-218ENST00000575207 TMTC1Q8IUR5 882 aa15.48■□□□□ 0.07
VPS53-218ENST00000575207 C19orf47Q8N9M1 422 aaKnown RBP15.48■□□□□ 0.07
VPS53-218ENST00000575207 CPA5Q8WXQ8 436 aa15.48■□□□□ 0.07
VPS53-218ENST00000575207 EID2BQ96D98 161 aa15.48■□□□□ 0.07
VPS53-218ENST00000575207 CRB3Q9BUF7 120 aa15.48■□□□□ 0.07
VPS53-218ENST00000575207 ZFYVE1Q9HBF4 777 aa15.48■□□□□ 0.07
VPS53-218ENST00000575207 GDPD2Q9HCC8 539 aa15.48■□□□□ 0.07
VPS53-218ENST00000575207 NFKBIL1Q9UBC1 381 aaPredicted RBP15.48■□□□□ 0.07
VPS53-218ENST00000575207 DNAJC13O75165 2243 aa15.47■□□□□ 0.07
VPS53-218ENST00000575207 BTN3A1O00481 513 aa15.47■□□□□ 0.07
VPS53-218ENST00000575207 POP7O75817 140 aaKnown RBP15.47■□□□□ 0.07
VPS53-218ENST00000575207 CELA2AP08217 269 aa15.47■□□□□ 0.07
VPS53-218ENST00000575207 NDUFS1P28331 727 aa15.47■□□□□ 0.07
VPS53-218ENST00000575207 RAB28P51157 221 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms