RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 HSPA12BQ96MM6 686 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 TRIM55Q9BYV6 548 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 ZDHHC5Q9C0B5 715 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 ILKAPQ9H0C8 392 aaPredicted RBP13.36□□□□□ -0.27
CCDC40-209ENST00000573474 WWP1Q9H0M0 922 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 GSTO2Q9H4Y5 243 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 ACSS2Q9NR19 701 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 WWOXQ9NZC7 414 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 KCNK6Q9Y257 313 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 RAP2CQ9Y3L5 183 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 PLEKHM1Q9Y4G2 1056 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 DGKBQ9Y6T7 804 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 SPTY2D1-AS1A0A0U1RR47 76 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 A0A1W2PR77 199 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 LRRC14BA6NHZ5 514 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 IFRD1O00458 451 aaPredicted RBP13.35□□□□□ -0.27
CCDC40-209ENST00000573474 TAPBPO15533 448 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 C1orf105O95561 183 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 RPN2P04844 631 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 CHRNGP07510 517 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 SLC35G4P0C7Q5 338 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 CD38P28907 300 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 GGT5P36269 586 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 CCR10P46092 362 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 CSTF1Q05048 431 aaKnown RBP13.35□□□□□ -0.27
CCDC40-209ENST00000573474 WDR45BQ5MNZ6 344 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 CAPRIN2Q6IMN6 1127 aaKnown RBP13.35□□□□□ -0.27
CCDC40-209ENST00000573474 ATG14Q6ZNE5 492 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 LPCAT2Q7L5N7 544 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 C11orf74Q86VG3 221 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 HID1Q8IV36 788 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 TMEFF1Q8IYR6 380 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 DTWD2Q8NBA8 298 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 MAGEC3Q8TD91 643 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 ZNF483Q8TF39 744 aaPredicted RBP13.35□□□□□ -0.27
CCDC40-209ENST00000573474 ATL1Q8WXF7 558 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 DNASE2BQ8WZ79 361 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 TFGQ92734 400 aaPredicted RBP13.35□□□□□ -0.27
CCDC40-209ENST00000573474 FBXL8Q96CD0 374 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 CD244Q9BZW8 370 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 OSGEPL1Q9H4B0 414 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 PNPOQ9NVS9 261 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 TRNAU1APQ9NX07 287 aaKnown RBP13.35□□□□□ -0.27
CCDC40-209ENST00000573474 KLHL14Q9P2G3 628 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 HAO1Q9UJM8 370 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 PCTPQ9UKL6 214 aa13.35□□□□□ -0.27
CCDC40-209ENST00000573474 TECTAO75443 2155 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 RASGRP1O95267 797 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 MLYCDO95822 493 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 BDKRB1P46663 353 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 HSPA7P48741 367 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 RPL14P50914 215 aaKnown RBP13.34□□□□□ -0.27
CCDC40-209ENST00000573474 HK2P52789 917 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 CDH13P55290 713 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 CTBSQ01459 385 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 CLCQ05315 142 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 EIF2B5Q13144 721 aaKnown RBP13.34□□□□□ -0.27
CCDC40-209ENST00000573474 FZD2Q14332 565 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 C18orf21Q32NC0 220 aaPredicted RBP13.34□□□□□ -0.27
CCDC40-209ENST00000573474 FBXO48Q5FWF7 155 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.34□□□□□ -0.27
CCDC40-209ENST00000573474 MBOAT1Q6ZNC8 495 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 RPS27LQ71UM5 84 aaKnown RBP13.34□□□□□ -0.27
CCDC40-209ENST00000573474 WDR75Q8IWA0 830 aaKnown RBP13.34□□□□□ -0.27
CCDC40-209ENST00000573474 MAML2Q8IZL2 1156 aaPredicted RBP13.34□□□□□ -0.27
CCDC40-209ENST00000573474 KIRREL3Q8IZU9 778 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 ZNF781Q8N8C0 355 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 TMEM105Q8N8V8 129 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 SPDYE1Q8NFV5 336 aaPredicted RBP13.34□□□□□ -0.27
CCDC40-209ENST00000573474 PIWIL2Q8TC59 973 aaKnown RBP13.34□□□□□ -0.27
CCDC40-209ENST00000573474 SEC16BQ96JE7 1060 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 RMDN2Q96LZ7 410 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 PKP4Q99569 1192 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 SIKE1Q9BRV8 207 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 MIR1-1HGQ9H1L0 117 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 TM9SF3Q9HD45 589 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 NPHS2Q9NP85 383 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 PNMA8BQ9ULN7 279 aaPredicted RBP13.34□□□□□ -0.27
CCDC40-209ENST00000573474 PSMD13Q9UNM6 376 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 ASF1AQ9Y294 204 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 SLCO1B1Q9Y6L6 691 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 PLXND1Q9Y4D7 1925 aa13.34□□□□□ -0.27
CCDC40-209ENST00000573474 K7EPI3 171 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 MYO1CO00159 1063 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 TLR4O00206 839 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 E2F3O00716 465 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 SCAMP1O15126 338 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 STK16O75716 305 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 WNT1P04628 370 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 KITP10721 976 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 MPSTP25325 297 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 MAOBP27338 520 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 RPL10P27635 214 aaKnown RBP13.33□□□□□ -0.28
CCDC40-209ENST00000573474 PIK3CGP48736 1102 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 BLKP51451 505 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 SF3A3Q12874 501 aaKnown RBP eCLIP13.33□□□□□ -0.284e-9■■■■■ 57
CCDC40-209ENST00000573474 LCP2Q13094 533 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 UAP1L1Q3KQV9 507 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 WASH2PQ6VEQ5 465 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms