RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 VWA5B2Q8N398 1253 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 SVOPQ8N4V2 548 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 AADATQ8N5Z0 425 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 RASGEF1AQ8N9B8 481 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 OR2T34Q8NGX1 318 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 OR14C36Q8NHC7 312 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 RP9Q8TA86 221 aaKnown RBP7.8□□□□□ -1.16
VPS39-213ENST00000570062 TSPEARQ8WU66 669 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 SKA2Q8WVK7 121 aaPredicted RBP7.8□□□□□ -1.16
VPS39-213ENST00000570062 EXT2Q93063 718 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 RHBDF1Q96CC6 855 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 FBXL8Q96CD0 374 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 THOC1Q96FV9 657 aaKnown RBP7.8□□□□□ -1.16
VPS39-213ENST00000570062 METTL2AQ96IZ6 378 aaKnown RBP7.8□□□□□ -1.16
VPS39-213ENST00000570062 ACOX2Q99424 681 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 SLC30A3Q99726 388 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 BTBD10Q9BSF8 475 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 IER2Q9BTL4 223 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 NTMT1Q9BV86 223 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 SLC17A9Q9BYT1 436 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 SLC29A3Q9BZD2 475 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 BTBD1Q9H0C5 482 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 LRMDAQ9H2I8 198 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 WDR26Q9H7D7 661 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 FBRSL1Q9HCM7 1045 aaKnown RBP7.8□□□□□ -1.16
VPS39-213ENST00000570062 MRPL40Q9NQ50 206 aaKnown RBP7.8□□□□□ -1.16
VPS39-213ENST00000570062 ITM2CQ9NQX7 267 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 HEBP1Q9NRV9 189 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 GPRC5BQ9NZH0 403 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 GALPQ9UBC7 116 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 WNT16Q9UBV4 365 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 TRPS1Q9UHF7 1281 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 PCTPQ9UKL6 214 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 HCN2Q9UL51 889 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 TMPRSS11EQ9UL52 423 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 CNOT6Q9ULM6 557 aaKnown RBP7.8□□□□□ -1.16
VPS39-213ENST00000570062 MTF2Q9Y483 593 aaPredicted RBP7.8□□□□□ -1.16
VPS39-213ENST00000570062 CAPN7Q9Y6W3 813 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 MIA3Q5JRA6 1907 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 GBF1Q92538 1859 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 CHD9Q3L8U1 2897 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 TBC1D3DA0A087WVF3 549 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 TBC1D3IA0A087WXS9 549 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 TBC1D3EA0A087X179 549 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 TBC1D3KA0A087X1G2 549 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 A0A0U1RQS6 177 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 A0A1W2PQF6 199 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 DYTNA2CJ06 578 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 CDC14CA4D256 554 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 TBC1D3FA6NER0 549 aaPredicted RBP7.79□□□□□ -1.16
VPS39-213ENST00000570062 IGLON5A6NGN9 336 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 CAPN14A8MX76 684 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 LOC730098B7Z3J9 87 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 TBC1D3LB9A6J9 549 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 IFRD1O00458 451 aaPredicted RBP7.79□□□□□ -1.16
VPS39-213ENST00000570062 FPGTO14772 594 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 UBDO15205 165 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 GYG2O15488 501 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 POP7O75817 140 aaKnown RBP7.79□□□□□ -1.16
VPS39-213ENST00000570062 IGLV3-19P01714 112 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 KRT6AP02538 564 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 KRT6BP04259 564 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 TBC1D3HP0C7X1 549 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 MYCLP1P12525 358 aaPredicted RBP7.79□□□□□ -1.16
VPS39-213ENST00000570062 HGFP14210 728 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 FOSL2P15408 326 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 GM2AP17900 193 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 ITGB6P18564 788 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 MPSTP25325 297 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 SOX9P48436 509 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 KRT6CP48668 564 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 ACADVLP49748 655 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 CCNG1P51959 295 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 TAS2R38P59533 333 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 YPEL5P62699 121 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 ARHGAP8P85298 464 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 CDK3Q00526 305 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 SEMG2Q02383 582 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 PCDH1Q08174 1060 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 DMPKQ09013 629 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 GTF2H2Q13888 395 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 CCINQ13939 588 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 BOP1Q14137 746 aaKnown RBP7.79□□□□□ -1.16
VPS39-213ENST00000570062 SQLEQ14534 574 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 ARHGAP19Q14CB8 494 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 MLF2Q15773 248 aaPredicted RBP7.79□□□□□ -1.16
VPS39-213ENST00000570062 WSCD2Q2TBF2 565 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 GGTA1PQ4G0N0 100 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 TMEM259Q4ZIN3 620 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 LRRC73Q5JTD7 316 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 CES4AQ5XG92 561 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 TBC1D3GQ6DHY5 549 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 NXNQ6DKJ4 435 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 TBC1D3CQ6IPX1 549 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 GTF2H2CQ6P1K8 395 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 RFLNAQ6ZTI6 216 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 CHSY3Q70JA7 882 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 DET1Q7L5Y6 550 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 SYT13Q7L8C5 426 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 MILR1Q7Z6M3 343 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms