RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 DHRS12A0PJE2 317 aa19.83■□□□□ 0.77
CLN3-230ENST00000568076 C7orf72A4D263 438 aa19.83■□□□□ 0.77
CLN3-230ENST00000568076 KRT87PA6NCN2 255 aa19.83■□□□□ 0.77
CLN3-230ENST00000568076 UPK3BL1B0FP48 263 aa19.83■□□□□ 0.77
CLN3-230ENST00000568076 UPK3BL2E5RIL1 263 aa19.83■□□□□ 0.77
CLN3-230ENST00000568076 DCDC1P59894 354 aa19.83■□□□□ 0.77
CLN3-230ENST00000568076 DHCR24Q15392 516 aa19.83■□□□□ 0.77
CLN3-230ENST00000568076 NRF1Q16656 503 aa19.83■□□□□ 0.77
CLN3-230ENST00000568076 POM121L1PQ3SYA9 428 aa19.83■□□□□ 0.77
CLN3-230ENST00000568076 TCEAL5Q5H9L2 206 aa19.83■□□□□ 0.77
CLN3-230ENST00000568076 ZNF648Q5T619 568 aaPredicted RBP19.83■□□□□ 0.77
CLN3-230ENST00000568076 RGL4Q8IZJ4 473 aa19.83■□□□□ 0.77
CLN3-230ENST00000568076 ZNF366Q8N895 744 aa19.83■□□□□ 0.77
CLN3-230ENST00000568076 SKA2Q8WVK7 121 aaPredicted RBP19.83■□□□□ 0.77
CLN3-230ENST00000568076 SLC29A1Q99808 456 aa19.83■□□□□ 0.77
CLN3-230ENST00000568076 KCTD14Q9BQ13 255 aaPredicted RBP19.83■□□□□ 0.77
CLN3-230ENST00000568076 EFHD1Q9BUP0 239 aa19.83■□□□□ 0.77
CLN3-230ENST00000568076 TRIM15Q9C019 465 aa19.83■□□□□ 0.77
CLN3-230ENST00000568076 ZNHIT2Q9UHR6 403 aa19.83■□□□□ 0.77
CLN3-230ENST00000568076 NEUROG3Q9Y4Z2 214 aa19.83■□□□□ 0.77
CLN3-230ENST00000568076 DYTNA2CJ06 578 aa19.83■□□□□ 0.76
CLN3-230ENST00000568076 GRXCR2A6NFK2 248 aa19.83■□□□□ 0.76
CLN3-230ENST00000568076 FADS2P1A8MWK0 482 aa19.83■□□□□ 0.76
CLN3-230ENST00000568076 ARNTLO00327 626 aa19.83■□□□□ 0.76
CLN3-230ENST00000568076 SLC28A1O00337 649 aa19.83■□□□□ 0.76
CLN3-230ENST00000568076 NPPAP01160 153 aa19.83■□□□□ 0.76
CLN3-230ENST00000568076 C8GP07360 202 aa19.83■□□□□ 0.76
CLN3-230ENST00000568076 ENO2P09104 434 aaPredicted RBP19.83■□□□□ 0.76
CLN3-230ENST00000568076 CISD3P0C7P0 127 aa19.83■□□□□ 0.76
CLN3-230ENST00000568076 OXTRP30559 389 aa19.83■□□□□ 0.76
CLN3-230ENST00000568076 EEFSECP57772 596 aaKnown RBP19.83■□□□□ 0.76
CLN3-230ENST00000568076 SLC44A4Q53GD3 710 aa19.83■□□□□ 0.76
CLN3-230ENST00000568076 PLEKHS1Q5SXH7 462 aa19.83■□□□□ 0.76
CLN3-230ENST00000568076 ERMP1Q7Z2K6 904 aa19.83■□□□□ 0.76
CLN3-230ENST00000568076 C12orf40Q86WS4 652 aa19.83■□□□□ 0.76
CLN3-230ENST00000568076 ADGRG5Q8IZF4 528 aa19.83■□□□□ 0.76
CLN3-230ENST00000568076 BEND7Q8N7W2 519 aaPredicted RBP19.83■□□□□ 0.76
CLN3-230ENST00000568076 ITFG1Q8TB96 612 aa19.83■□□□□ 0.76
CLN3-230ENST00000568076 Q9H521 79 aa19.83■□□□□ 0.76
CLN3-230ENST00000568076 IL36AQ9UHA7 158 aa19.83■□□□□ 0.76
CLN3-230ENST00000568076 AURKCQ9UQB9 309 aa19.83■□□□□ 0.76
CLN3-230ENST00000568076 CHD9Q3L8U1 2897 aa19.82■□□□□ 0.76
CLN3-230ENST00000568076 AP1G1O43747 822 aa19.82■□□□□ 0.76
CLN3-230ENST00000568076 CLDN9O95484 217 aa19.82■□□□□ 0.76
CLN3-230ENST00000568076 CYP17A1P05093 508 aa19.82■□□□□ 0.76
CLN3-230ENST00000568076 MPC1LP0DKB6 136 aa19.82■□□□□ 0.76
CLN3-230ENST00000568076 NCK1P16333 377 aa19.82■□□□□ 0.76
CLN3-230ENST00000568076 VARSP26640 1264 aaKnown RBP19.82■□□□□ 0.76
CLN3-230ENST00000568076 SOX11P35716 441 aa19.82■□□□□ 0.76
CLN3-230ENST00000568076 SELPLGQ14242 412 aa19.82■□□□□ 0.76
CLN3-230ENST00000568076 HENMT1Q5T8I9 393 aaKnown RBP19.82■□□□□ 0.76
CLN3-230ENST00000568076 HID1Q8IV36 788 aa19.82■□□□□ 0.76
CLN3-230ENST00000568076 PPWD1Q96BP3 646 aaKnown RBP19.82■□□□□ 0.76
CLN3-230ENST00000568076 ZNF597Q96LX8 424 aa19.82■□□□□ 0.76
CLN3-230ENST00000568076 CIB1Q99828 191 aa19.82■□□□□ 0.76
CLN3-230ENST00000568076 RIOK2Q9BVS4 552 aaKnown RBP19.82■□□□□ 0.76
CLN3-230ENST00000568076 SLC29A3Q9BZD2 475 aa19.82■□□□□ 0.76
CLN3-230ENST00000568076 PLXNA2O75051 1894 aa19.82■□□□□ 0.76
CLN3-230ENST00000568076 TCRBV5S2A0A599 114 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 GFYI3L273 518 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 AKAP10O43572 662 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 NNMTP40261 264 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 GRIA2P42262 883 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 GNPDA1P46926 289 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 SLC6A12P48065 614 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 HSPA13P48723 471 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 UBE3AQ05086 875 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 INPP5AQ14642 412 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 CPSF6Q16630 551 aaKnown RBP eCLIP19.81■□□□□ 0.76
CLN3-230ENST00000568076 SMU1Q2TAY7 513 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 TBCELQ5QJ74 424 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 NEK5Q6P3R8 708 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 SUSD1Q6UWL2 747 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 ANKFN1Q8N957 763 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 GOLM1Q8NBJ4 401 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 PYCR2Q96C36 320 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 MTFMTQ96DP5 389 aaKnown RBP19.81■□□□□ 0.76
CLN3-230ENST00000568076 RSPRY1Q96DX4 576 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 CNBD2Q96M20 576 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 PPM1MQ96MI6 270 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 P2RY13Q9BPV8 354 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 ACPTQ9BZG2 426 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 ACTR8Q9H981 624 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 ZFP14Q9HCL3 533 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 BMP2P12643 396 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 MYOGP15173 224 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 CKMT2P17540 419 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 DGKGP49619 791 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 MESP2Q0VG99 397 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 ZNF805Q5CZA5 627 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 PSRC1Q6PGN9 363 aaPredicted RBP19.81■□□□□ 0.76
CLN3-230ENST00000568076 LRRC70Q7Z2Q7 622 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 LIX1Q8N485 282 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 TRAM1L1Q8N609 369 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 DDHD1Q8NEL9 900 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 MUC13Q9H3R2 512 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 LRTM1Q9HBL6 345 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 PRKAG2Q9UGJ0 569 aa19.81■□□□□ 0.76
CLN3-230ENST00000568076 EIF3LQ9Y262 564 aaKnown RBP19.81■□□□□ 0.76
CLN3-230ENST00000568076 KCNE1BA0A087WTH5 132 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms