RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 ZNF761Q86XN6 746 aaPredicted RBP16.84■□□□□ 0.29
CLN3-217ENST00000565354 IFT20Q8IY31 132 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 GFM1Q96RP9 751 aaKnown RBP16.84■□□□□ 0.29
CLN3-217ENST00000565354 LRRN3Q9H3W5 708 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 ZFATQ9P243 1243 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 RABGEF1Q9UJ41 708 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 ATXN7L1Q9ULK2 861 aaPredicted RBP16.84■□□□□ 0.29
CLN3-217ENST00000565354 HEBP2Q9Y5Z4 205 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 CFAP20Q9Y6A4 193 aaKnown RBP16.84■□□□□ 0.29
CLN3-217ENST00000565354 TERTO14746 1132 aaKnown RBP16.83■□□□□ 0.28
CLN3-217ENST00000565354 TNFSF15O95150 251 aa16.83■□□□□ 0.28
CLN3-217ENST00000565354 F7P08709 466 aaPredicted RBP16.83■□□□□ 0.28
CLN3-217ENST00000565354 MTHFD1P11586 935 aaKnown RBP16.83■□□□□ 0.28
CLN3-217ENST00000565354 MAGEA4P43358 317 aa16.83■□□□□ 0.28
CLN3-217ENST00000565354 ADARP55265 1226 aaKnown RBP16.83■□□□□ 0.28
CLN3-217ENST00000565354 UBE2IP63279 158 aaKnown RBP16.83■□□□□ 0.28
CLN3-217ENST00000565354 MGAT5Q09328 741 aa16.83■□□□□ 0.28
CLN3-217ENST00000565354 MAP9Q49MG5 647 aa16.83■□□□□ 0.28
CLN3-217ENST00000565354 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.83■□□□□ 0.28
CLN3-217ENST00000565354 TRMT10BQ6PF06 316 aaKnown RBP16.83■□□□□ 0.28
CLN3-217ENST00000565354 XKR5Q6UX68 686 aa16.83■□□□□ 0.28
CLN3-217ENST00000565354 KIAA0408Q6ZU52 694 aa16.83■□□□□ 0.28
CLN3-217ENST00000565354 OTOAQ7RTW8 1153 aa16.83■□□□□ 0.28
CLN3-217ENST00000565354 ZNF438Q7Z4V0 828 aa16.83■□□□□ 0.28
CLN3-217ENST00000565354 RBM12BQ8IXT5 1001 aaKnown RBP16.83■□□□□ 0.28
CLN3-217ENST00000565354 C2CD4AQ8NCU7 369 aaPredicted RBP16.83■□□□□ 0.28
CLN3-217ENST00000565354 OR10G6Q8NH81 332 aa16.83■□□□□ 0.28
CLN3-217ENST00000565354 LKAAEAR1Q8TD35 194 aa16.83■□□□□ 0.28
CLN3-217ENST00000565354 ASZ1Q8WWH4 475 aa16.83■□□□□ 0.28
CLN3-217ENST00000565354 CDKL2Q92772 493 aa16.83■□□□□ 0.28
CLN3-217ENST00000565354 C9orf72Q96LT7 481 aa16.83■□□□□ 0.28
CLN3-217ENST00000565354 RMDN2Q96LZ7 410 aa16.83■□□□□ 0.28
CLN3-217ENST00000565354 INSM2Q96T92 566 aaPredicted RBP16.83■□□□□ 0.28
CLN3-217ENST00000565354 FMO2Q99518 471 aa16.83■□□□□ 0.28
CLN3-217ENST00000565354 TSPYL1Q9H0U9 437 aa16.83■□□□□ 0.28
CLN3-217ENST00000565354 ZNF624Q9P2J8 865 aaPredicted RBP16.83■□□□□ 0.28
CLN3-217ENST00000565354 COLEC10Q9Y6Z7 277 aa16.83■□□□□ 0.28
CLN3-217ENST00000565354 CCDC187A0A096LP49 1063 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 EFSO43281 561 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 NIPSNAP2O75323 286 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 ITGA2BP08514 1039 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 GSTA2P09210 222 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 NDUFS1P28331 727 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 CCR7P32248 378 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 CBLBQ13191 982 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 CUL1Q13616 776 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 FRG1Q14331 258 aaKnown RBP16.82■□□□□ 0.28
CLN3-217ENST00000565354 PLCL1Q15111 1095 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 LINC00303Q3SY05 128 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 ZNF789Q5FWF6 425 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 CTSL3PQ5NE16 218 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 SPDYE1Q8NFV5 336 aaPredicted RBP16.82■□□□□ 0.28
CLN3-217ENST00000565354 SKA2Q8WVK7 121 aaPredicted RBP16.82■□□□□ 0.28
CLN3-217ENST00000565354 FAM136AQ96C01 138 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 BIRC8Q96P09 236 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 FERD3LQ96RJ6 166 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 OR52A5Q9H2C5 316 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 ZDHHC18Q9NUE0 388 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 NSMCE4AQ9NXX6 385 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 COMMD10Q9Y6G5 202 aa16.82■□□□□ 0.28
CLN3-217ENST00000565354 PIKFYVEQ9Y2I7 2098 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 SLC5A10A0PJK1 596 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 DUX1O43812 170 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 HAUS5O94927 633 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 AMD1P17707 334 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 PDHA2P29803 388 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 SSTR1P30872 391 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 LEPRP48357 1165 aaKnown RBP16.81■□□□□ 0.28
CLN3-217ENST00000565354 CD151P48509 253 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 PDX1P52945 283 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 EPHA4P54764 986 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 GPLD1P80108 840 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 NR1D2Q14995 579 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 TEDDM1Q5T9Z0 273 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 CAPRIN2Q6IMN6 1127 aaKnown RBP16.81■□□□□ 0.28
CLN3-217ENST00000565354 DUS1LQ6P1R4 473 aaKnown RBP16.81■□□□□ 0.28
CLN3-217ENST00000565354 CNSTQ6PJW8 725 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 C3orf62Q6ZUJ4 267 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 TMEM26Q6ZUK4 368 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 CNTN4Q8IWV2 1026 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 TFGQ92734 400 aaPredicted RBP16.81■□□□□ 0.28
CLN3-217ENST00000565354 TBC1D10AQ9BXI6 508 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 STARD5Q9NSY2 213 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 TXNDC16Q9P2K2 825 aa16.81■□□□□ 0.28
CLN3-217ENST00000565354 IGHV1OR21-1A0A087WYE8 117 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 LILRA5A6NI73 299 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 BHMG1C9JSJ3 638 aaPredicted RBP16.8■□□□□ 0.28
CLN3-217ENST00000565354 B4GAT1O43505 415 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 VPS26AO75436 327 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 SPAG6O75602 509 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 AOAHP28039 575 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 GPR18Q14330 331 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 TTLL9Q3SXZ7 439 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 ZNF658BQ4V348 819 aaPredicted RBP16.8■□□□□ 0.28
CLN3-217ENST00000565354 COLEC12Q5KU26 742 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 PLEKHS1Q5SXH7 462 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 NKAIN2Q5VXU1 208 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 ATG14Q6ZNE5 492 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 USP53Q70EK8 1073 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 PIM3Q86V86 326 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms