RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ALKBH2Q6NS38 261 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 DPY19L2P1Q6NXN4 242 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 MED27Q6P2C8 311 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 LONP2Q86WA8 852 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 MREGQ8N565 214 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 LMNTD1Q8N9Z9 388 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 FBXO15Q8NCQ5 510 aaPredicted RBP9.05□□□□□ -0.96
VPS39-205ENST00000562258 PNPT1Q8TCS8 783 aaKnown RBP9.05□□□□□ -0.96
VPS39-205ENST00000562258 SPPL2AQ8TCT8 520 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 GAL3ST4Q96RP7 486 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 SEPHS2Q99611 448 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 RBCK1Q9BYM8 510 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 EXO5Q9H790 373 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 NDE1Q9NXR1 346 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 RGPD3A6NKT7 1758 aaPredicted RBP9.05□□□□□ -0.96
VPS39-205ENST00000562258 RGPD4Q7Z3J3 1758 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 OR6C74A6NCV1 312 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 ZNF487B1APH4 448 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 MRASO14807 208 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 CBX6O95503 412 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 PPP2R1BP30154 601 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 PGDP52209 483 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 C2orf80Q0P641 193 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 SLC13A2Q13183 592 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 MAD2L1Q13257 205 aaPredicted RBP9.05□□□□□ -0.96
VPS39-205ENST00000562258 TCEAL1Q15170 157 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 MAPKAPK3Q16644 382 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 IL22RA1Q8N6P7 574 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 ARRDC3Q96B67 414 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 RBM18Q96H35 190 aaKnown RBP9.05□□□□□ -0.96
VPS39-205ENST00000562258 CPEB1Q9BZB8 566 aaKnown RBP9.05□□□□□ -0.96
VPS39-205ENST00000562258 PRKAG3Q9UGI9 489 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 RAP2CQ9Y3L5 183 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 CEP350Q5VT06 3117 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 ATAD5Q96QE3 1844 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 CCT8L1PA6NM43 557 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 LMNAP02545 664 aaKnown RBP9.05□□□□□ -0.96
VPS39-205ENST00000562258 GSTM1P09488 218 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 ANXA4P09525 319 aaPredicted RBP9.05□□□□□ -0.96
VPS39-205ENST00000562258 ATP6V1C1P21283 382 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 NT5EP21589 574 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 CENPAP49450 140 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 MNX1P50219 401 aaPredicted RBP9.05□□□□□ -0.96
VPS39-205ENST00000562258 MANFP55145 182 aaKnown RBP9.05□□□□□ -0.96
VPS39-205ENST00000562258 PKNOX1P55347 436 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 GSCP56915 257 aaPredicted RBP9.05□□□□□ -0.96
VPS39-205ENST00000562258 ALDH6A1Q02252 535 aaKnown RBP9.05□□□□□ -0.96
VPS39-205ENST00000562258 DEFB107AQ8IZN7 70 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 TRAM1L1Q8N609 369 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 TRIML2Q8N7C3 387 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 MDGA1Q8NFP4 955 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 HM13Q8TCT9 377 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 FIG4Q92562 907 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 EDAQ92838 391 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 NT5C3BQ969T7 300 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 PMEPA1Q969W9 287 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 CCDC138Q96M89 665 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 OLFM3Q96PB7 478 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 ZNF395Q9H8N7 513 aaPredicted RBP9.05□□□□□ -0.96
VPS39-205ENST00000562258 PRDM8Q9NQV8 689 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 ALKBH4Q9NXW9 302 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 VTI1BQ9UEU0 232 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 A0A1B0GVT2 93 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 H0Y8X5 98 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 BCAT2O15382 392 aaPredicted RBP9.04□□□□□ -0.96
VPS39-205ENST00000562258 ERI3O43414 337 aaKnown RBP9.04□□□□□ -0.96
VPS39-205ENST00000562258 BMP10O95393 424 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 CHRNGP07510 517 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 SYPP08247 313 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 CRHR1P34998 444 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 HPCAL1P37235 193 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 MAPK12P53778 367 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 PRKAA2P54646 552 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 TAF11Q15544 211 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 SULT1C3Q6IMI6 304 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 CYP2R1Q6VVX0 501 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 GPR180Q86V85 440 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 ABCA7Q8IZY2 2146 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 ARRDC2Q8TBH0 407 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 MAPK15Q8TD08 544 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 SMPDL3AQ92484 453 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 PPP3R2Q96LZ3 170 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 PANX1Q96RD7 426 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 APOOQ9BUR5 198 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 HS3ST2Q9Y278 367 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 NFS1Q9Y697 457 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 PLXNB2O15031 1838 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 KHNYNO15037 678 aaKnown RBP9.04□□□□□ -0.96
VPS39-205ENST00000562258 B4GALT2O60909 372 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 CDC123O75794 336 aaPredicted RBP9.04□□□□□ -0.96
VPS39-205ENST00000562258 NDUFS1P28331 727 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 TNFRSF8P28908 595 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 MLLT3P42568 568 aaPredicted RBP9.04□□□□□ -0.96
VPS39-205ENST00000562258 TPMTP51580 245 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 ARHGAP8P85298 464 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 HHEXQ03014 270 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 ADGRE1Q14246 886 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 SIX1Q15475 284 aaPredicted RBP9.04□□□□□ -0.96
VPS39-205ENST00000562258 SLC9B2Q86UD5 537 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 ANKRD46Q86W74 232 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms