RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 MFRPQ9BY79 579 aa15.9■□□□□ 0.14
CLN3-208ENST00000561505 ZNF552Q9H707 407 aaPredicted RBP15.9■□□□□ 0.14
CLN3-208ENST00000561505 FAM60AQ9NP50 221 aa15.9■□□□□ 0.14
CLN3-208ENST00000561505 ENAMQ9NRM1 1142 aa15.9■□□□□ 0.14
CLN3-208ENST00000561505 ZDHHC3Q9NYG2 299 aa15.9■□□□□ 0.14
CLN3-208ENST00000561505 FEZ2Q9UHY8 353 aaPredicted RBP15.9■□□□□ 0.14
CLN3-208ENST00000561505 B3GNT3Q9Y2A9 372 aa15.9■□□□□ 0.14
CLN3-208ENST00000561505 AAR2Q9Y312 384 aaKnown RBP15.9■□□□□ 0.14
CLN3-208ENST00000561505 AP1M2Q9Y6Q5 423 aa15.9■□□□□ 0.14
CLN3-208ENST00000561505 CREBBPQ92793 2442 aa15.9■□□□□ 0.14
CLN3-208ENST00000561505 CCDC66A2RUB6 948 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 CFAP99D6REC4 459 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 F5H423 210 aaPredicted RBP15.89■□□□□ 0.13
CLN3-208ENST00000561505 KLHL41O60662 606 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 MFAP3LO75121 409 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 ONECUT2O95948 504 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 TPBGLP0DKB5 382 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 AGXTP21549 392 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 MARCKSL1P49006 195 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 COPS2P61201 443 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 LLGL1Q15334 1064 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 ZIC1Q15915 447 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 ITPRIPL1Q6GPH6 555 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 MRPL14Q6P1L8 145 aaKnown RBP15.89■□□□□ 0.13
CLN3-208ENST00000561505 SPESP1Q6UW49 350 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 Q6ZS92 163 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 TICAM1Q8IUC6 712 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 IQCKQ8N0W5 287 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 FERD3LQ96RJ6 166 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 CASS4Q9NQ75 786 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 ASF1BQ9NVP2 202 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 ACTR10Q9NZ32 417 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 PADI2Q9Y2J8 665 aa15.89■□□□□ 0.13
CLN3-208ENST00000561505 GSAPA4D1B5 854 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 A6NL46 340 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 C9J4A7 227 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 IFRD1O00458 451 aaPredicted RBP15.88■□□□□ 0.13
CLN3-208ENST00000561505 DDX3YO15523 660 aaKnown RBP15.88■□□□□ 0.13
CLN3-208ENST00000561505 HCRTR1O43613 425 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 CNOT3O75175 753 aaKnown RBP15.88■□□□□ 0.13
CLN3-208ENST00000561505 CBSLP0DN79 551 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 TNNT1P13805 278 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 PVRP15151 417 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 ITGALP20701 1170 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 ACADLP28330 430 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 PTPN7P35236 360 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 CBSP35520 551 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 OLIG2Q13516 323 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 KRT33BQ14525 404 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 ANKRD20A2Q5SQ80 823 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 ANKRD20A1Q5TYW2 823 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 ANKRD20A3Q5VUR7 823 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 GALNT16Q8N428 558 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 PHC3Q8NDX5 983 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 OR2Y1Q8NGV0 311 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 PROKR1Q8TCW9 393 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 TFGQ92734 400 aaPredicted RBP15.88■□□□□ 0.13
CLN3-208ENST00000561505 INPP5DQ92835 1189 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.88■□□□□ 0.13
CLN3-208ENST00000561505 RBM41Q96IZ5 413 aaKnown RBP15.88■□□□□ 0.13
CLN3-208ENST00000561505 FER1L6-AS2Q96M78 137 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 OR2A14Q96R47 310 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 RANBP9Q96S59 729 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 ANP32EQ9BTT0 268 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 LUZP4Q9P127 313 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 FAM8A1Q9UBU6 413 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 CRLS1Q9UJA2 301 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 ICKQ9UPZ9 632 aa15.88■□□□□ 0.13
CLN3-208ENST00000561505 ABCA12Q86UK0 2595 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 PIKFYVEQ9Y2I7 2098 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 MAP3K7O43318 606 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 CBFA2T2O43439 604 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 KRT86O43790 486 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 AP2A2O94973 939 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 ACRV1P26436 265 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 DCTP40126 519 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 CDKN1CP49918 316 aaPredicted RBP15.87■□□□□ 0.13
CLN3-208ENST00000561505 TBX2Q13207 712 aaPredicted RBP15.87■□□□□ 0.13
CLN3-208ENST00000561505 ZRANB3Q5FWF4 1079 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 KCTD11Q693B1 232 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 C11orf63Q6NUN7 778 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 IGFL2Q6UWQ7 119 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 C19orf47Q8N9M1 422 aaKnown RBP15.87■□□□□ 0.13
CLN3-208ENST00000561505 PRR7Q8TB68 274 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 ACTL9Q8TC94 416 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 HAUS1Q96CS2 278 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 PPP1R2P1Q96PQ5 205 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 GOLPH3Q9H4A6 298 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 C10orf88Q9H8K7 445 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 SLC5A6Q9Y289 635 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 CACNA1DQ01668 2161 aa15.87■□□□□ 0.13
CLN3-208ENST00000561505 IPO13O94829 963 aaKnown RBP15.86■□□□□ 0.13
CLN3-208ENST00000561505 PSMB4P28070 264 aa15.86■□□□□ 0.13
CLN3-208ENST00000561505 DCDP81605 110 aaKnown RBP15.86■□□□□ 0.13
CLN3-208ENST00000561505 NR6A1Q15406 480 aa15.86■□□□□ 0.13
CLN3-208ENST00000561505 UNC5AQ6ZN44 842 aa15.86■□□□□ 0.13
CLN3-208ENST00000561505 PPP1R32Q7Z5V6 425 aa15.86■□□□□ 0.13
CLN3-208ENST00000561505 SERPINA9Q86WD7 417 aa15.86■□□□□ 0.13
CLN3-208ENST00000561505 TBC1D21Q8IYX1 336 aa15.86■□□□□ 0.13
CLN3-208ENST00000561505 GPR135Q8IZ08 494 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms