RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 CAPN1P07384 714 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 HADHAP40939 763 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 PGDP52209 483 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 GDF10P55107 478 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 POU6F1Q14863 301 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 DBN1Q16643 649 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 FAM198BQ6UWH4 519 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 RAD9BQ6WBX8 426 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 TAS2R42Q7RTR8 314 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 TRIM73Q86UV7 250 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 ADGRF3Q8IZF5 1079 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 TAB3Q8N5C8 712 aaPredicted RBP11.28□□□□□ -0.6
USP3-220ENST00000561381 FAM71DQ8N9W8 422 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 ACRBPQ8NEB7 543 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 SEC14L1Q92503 715 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 CPT1BQ92523 772 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 TFGQ92734 400 aaPredicted RBP11.28□□□□□ -0.6
USP3-220ENST00000561381 CLIP3Q96DZ5 547 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 PITPNM3Q9BZ71 974 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 TFB2MQ9H5Q4 396 aaKnown RBP11.28□□□□□ -0.6
USP3-220ENST00000561381 ACTR5Q9H9F9 607 aaPredicted RBP11.28□□□□□ -0.6
USP3-220ENST00000561381 MLXIPLQ9NP71 852 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 LUC7LQ9NQ29 371 aaKnown RBP11.28□□□□□ -0.6
USP3-220ENST00000561381 PCMTD2Q9NV79 361 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 TCFL5Q9UL49 500 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 PACSIN2Q9UNF0 486 aaPredicted RBP11.28□□□□□ -0.6
USP3-220ENST00000561381 SNX7Q9UNH6 387 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 R3HDM2Q9Y2K5 976 aaKnown RBP11.28□□□□□ -0.6
USP3-220ENST00000561381 PRSS21Q9Y6M0 314 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 PCSK5Q92824 1860 aa11.27□□□□□ -0.6
USP3-220ENST00000561381 LRRK2Q5S007 2527 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 A0A0U1RQJ8 604 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 OR51F1A6NGY5 319 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 H7C0S8 307 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 HCRTR1O43613 425 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 RAB40ALP0C0E4 278 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 CYP2A7P20853 494 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 ITGA1P56199 1179 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 GSDMDP57764 484 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 BOP1Q14137 746 aaKnown RBP11.27□□□□□ -0.61
USP3-220ENST00000561381 BRD3Q15059 726 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 PARP6Q2NL67 630 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 GPR33Q49SQ1 333 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 SWT1Q5T5J6 900 aaKnown RBP11.27□□□□□ -0.61
USP3-220ENST00000561381 NAPRTQ6XQN6 538 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 ARHGEF18Q6ZSZ5 1173 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 CDHR3Q6ZTQ4 885 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 ATCAYQ86WG3 371 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 AMIGO1Q86WK6 493 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 SYTL1Q8IYJ3 562 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 ZBTB2Q8N680 514 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 FDCSPQ8NFU4 85 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 OR5AR1Q8NGP9 310 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 HEXDCQ8WVB3 486 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 CDKN2AIPNLQ96HQ2 116 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 TRAPPC9Q96Q05 1148 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 PANX2Q96RD6 677 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 C19orf43Q9BQ61 176 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 NLNQ9BYT8 704 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 MVB12BQ9H7P6 319 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 FANCEQ9HB96 536 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 FAM60AQ9NP50 221 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 NLE1Q9NVX2 485 aaPredicted RBP11.27□□□□□ -0.61
USP3-220ENST00000561381 ACTR10Q9NZ32 417 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 SMARCAL1Q9NZC9 954 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 LUZP4Q9P127 313 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 FEZ2Q9UHY8 353 aaPredicted RBP11.27□□□□□ -0.61
USP3-220ENST00000561381 ICKQ9UPZ9 632 aa11.27□□□□□ -0.61
USP3-220ENST00000561381 PCDHGA9Q9Y5G4 932 aaKnown RBP11.27□□□□□ -0.61
USP3-220ENST00000561381 FER1L5A0AVI2 2057 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 SHANK1Q9Y566 2161 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 TCRBV7S2A1N4TA0A589 114 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 BLACEA4D250 179 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 A6NL46 340 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 BTNL10A8MVZ5 291 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 C2orf74A8MZ97 194 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 MATN2O00339 956 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 LCE2BO14633 110 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 ZNF185O15231 689 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 ZNF749O43361 778 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 TMEM63AO94886 807 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 CTSBP07858 339 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 MSL3P1P0C860 447 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 TPBGLP0DKB5 382 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 GP1BBP13224 206 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 GNLYP22749 145 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 CD151P48509 253 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 ZNF75DP51815 510 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 CACNG1Q06432 222 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 ZIC1Q15915 447 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 DEFB110Q30KQ9 67 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 CCDC38Q502W7 563 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 PRR30Q53SZ7 412 aaPredicted RBP11.26□□□□□ -0.61
USP3-220ENST00000561381 PAPD7Q5XG87 772 aaKnown RBP11.26□□□□□ -0.61
USP3-220ENST00000561381 TMTC1Q8IUR5 882 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 CPT1CQ8TCG5 803 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 STYXQ8WUJ0 223 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 PPP1R2P1Q96PQ5 205 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 PSMG3-AS1Q96PY0 264 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 TMEM121Q9BTD3 319 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms