RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 SPNP16150 400 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 GSTM2P28161 218 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 HTR1EP28566 365 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 EEFSECP57772 596 aaKnown RBP12.11□□□□□ -0.47
LDLR-205ENST00000557933 NFKB2Q00653 900 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 DMPKQ09013 629 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 CARD16Q5EG05 197 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 MSANTD2Q6P1R3 559 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 ZNF280BQ86YH2 543 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 MSRB3Q8IXL7 192 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 SYTL1Q8IYJ3 562 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 OR56A4Q8NGH8 313 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 GIPC2Q8TF65 315 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 POLR1EQ9GZS1 481 aaKnown RBP12.11□□□□□ -0.47
LDLR-205ENST00000557933 ATP13A1Q9HD20 1204 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 ENPP5Q9UJA9 477 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 ABT1Q9ULW3 272 aaKnown RBP12.11□□□□□ -0.47
LDLR-205ENST00000557933 GPC6Q9Y625 555 aaPredicted RBP12.11□□□□□ -0.47
LDLR-205ENST00000557933 A0A096LPI6 279 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 CXCR6O00574 342 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 LSM1O15116 133 aaKnown RBP12.1□□□□□ -0.47
LDLR-205ENST00000557933 SEC22BO75396 215 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 SEC24AO95486 1093 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 TSPAN12O95859 305 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 ALPIP09923 528 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 GGT1P19440 569 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 C21orf33P30042 268 aaPredicted RBP12.1□□□□□ -0.47
LDLR-205ENST00000557933 GKP32189 559 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 CDKN2CP42773 168 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 CRYBB1P53674 252 aaPredicted RBP12.1□□□□□ -0.47
LDLR-205ENST00000557933 GRSF1Q12849 480 aaKnown RBP eCLIP12.1□□□□□ -0.47
LDLR-205ENST00000557933 CRHR2Q13324 411 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 XKR7Q5GH72 579 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 CTSL3PQ5NE16 218 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 SEPT5Q99719 369 aaPredicted RBP12.1□□□□□ -0.47
LDLR-205ENST00000557933 OSBPL10Q9BXB5 764 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 TFB2MQ9H5Q4 396 aaKnown RBP12.1□□□□□ -0.47
LDLR-205ENST00000557933 ARNT2Q9HBZ2 717 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 HMG20AQ9NP66 347 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 ATAD3AQ9NVI7 634 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 ZNF99A8MXY4 864 aaPredicted RBP12.1□□□□□ -0.47
LDLR-205ENST00000557933 BNIP3LO60238 219 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 GNRH1P01148 92 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 IRF1P10914 325 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 PABPC1P11940 636 aaKnown RBP12.1□□□□□ -0.47
LDLR-205ENST00000557933 TNFRSF1BP20333 461 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 PON2Q15165 354 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 SUSD1Q6UWL2 747 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 GOLGA7Q7Z5G4 137 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 B3GNT8Q7Z7M8 397 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 CACTIN-AS1Q8N1I8 211 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 TMEM86AQ8N2M4 240 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 SKA2Q8WVK7 121 aaPredicted RBP12.1□□□□□ -0.47
LDLR-205ENST00000557933 SLC13A3Q8WWT9 602 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 ISG20Q96AZ6 181 aaKnown RBP12.1□□□□□ -0.47
LDLR-205ENST00000557933 SMPD4Q9NXE4 827 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 SAGE1Q9NXZ1 904 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 MAGEL2Q9UJ55 1249 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 GIT1Q9Y2X7 761 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 PGLSO95336 258 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 GLUD1P00367 558 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 VIPP01282 170 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 SERPINF2P08697 491 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 TACR1P25103 407 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 CD6P30203 668 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 PPP2R2BQ00005 443 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 CDK5R2Q13319 367 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 PHKG1Q16816 387 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 FAM214AQ32MH5 1076 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 PRSS36Q5K4E3 855 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 BRMS1LQ5PSV4 323 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 MICU2Q8IYU8 434 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 LKAAEAR1Q8TD35 194 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 CD200R1Q8TD46 325 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 RSPH1Q8WYR4 309 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 PROX1Q92786 737 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 PPP1R14BQ96C90 147 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 DACH2Q96NX9 599 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 OR52E6Q96RD3 313 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 GPN2Q9H9Y4 310 aaPredicted RBP12.1□□□□□ -0.47
LDLR-205ENST00000557933 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.1□□□□□ -0.47
LDLR-205ENST00000557933 TAS2R16Q9NYV7 291 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 PCDH10Q9P2E7 1040 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 ZNF639Q9UID6 485 aa12.1□□□□□ -0.47
LDLR-205ENST00000557933 TMA7Q9Y2S6 64 aaKnown RBP12.1□□□□□ -0.47
LDLR-205ENST00000557933 H0YAE9 185 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 OR7A17O14581 309 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 TNFRSF10BO14763 440 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 UGT2B11O75310 529 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 CHRNA1P02708 482 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 ALDH2P05091 517 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 HSMCR30P0CW71 290 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 PCMT1P22061 227 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 PCYT1AP49585 367 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 CRISP3P54108 245 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 IL2P60568 153 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 SELENBP1Q13228 472 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 ZNF846Q147U1 533 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 TTC23Q5W5X9 447 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 FAM151BQ6UXP7 276 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms