RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 PWWP2BQ6NUJ5 590 aa2.82□□□□□ -1.96
SCFD1-218ENST00000556256 KRT74Q7RTS7 529 aa2.82□□□□□ -1.96
SCFD1-218ENST00000556256 AACSQ86V21 672 aa2.82□□□□□ -1.96
SCFD1-218ENST00000556256 ZNF584Q8IVC4 421 aa2.82□□□□□ -1.96
SCFD1-218ENST00000556256 ARID3BQ8IVW6 561 aaPredicted RBP2.82□□□□□ -1.96
SCFD1-218ENST00000556256 MAP7D3Q8IWC1 876 aa2.82□□□□□ -1.96
SCFD1-218ENST00000556256 SCYL3Q8IZE3 742 aa2.82□□□□□ -1.96
SCFD1-218ENST00000556256 OR8H2Q8N162 312 aa2.82□□□□□ -1.96
SCFD1-218ENST00000556256 RASGEF1CQ8N431 466 aa2.82□□□□□ -1.96
SCFD1-218ENST00000556256 THAP6Q8TBB0 222 aa2.82□□□□□ -1.96
SCFD1-218ENST00000556256 PRPF31Q8WWY3 499 aaKnown RBP2.82□□□□□ -1.96
SCFD1-218ENST00000556256 SAT2Q96F10 170 aaPredicted RBP2.82□□□□□ -1.96
SCFD1-218ENST00000556256 TMEM39BQ9GZU3 492 aa2.82□□□□□ -1.96
SCFD1-218ENST00000556256 SIX2Q9NPC8 291 aa2.82□□□□□ -1.96
SCFD1-218ENST00000556256 MORF4L1Q9UBU8 362 aa2.82□□□□□ -1.96
SCFD1-218ENST00000556256 DNAJB4Q9UDY4 337 aa2.82□□□□□ -1.96
SCFD1-218ENST00000556256 STK39Q9UEW8 545 aa2.82□□□□□ -1.96
SCFD1-218ENST00000556256 CHORDC1Q9UHD1 332 aaPredicted RBP2.82□□□□□ -1.96
SCFD1-218ENST00000556256 RPS6KA6Q9UK32 745 aa2.82□□□□□ -1.96
SCFD1-218ENST00000556256 PLAGL1Q9UM63 463 aa2.82□□□□□ -1.96
SCFD1-218ENST00000556256 WBP11Q9Y2W2 641 aaKnown RBP2.82□□□□□ -1.96
SCFD1-218ENST00000556256 PTRH2Q9Y3E5 179 aaKnown RBP2.82□□□□□ -1.96
SCFD1-218ENST00000556256 SEC23IPQ9Y6Y8 1000 aaKnown RBP2.82□□□□□ -1.96
SCFD1-218ENST00000556256 IGLV3-10A0A075B6K4 115 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 LOC102723996A0A087X1L8 192 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 EIF4E1BA6NMX2 242 aaKnown RBP2.81□□□□□ -1.96
SCFD1-218ENST00000556256 KLLNB2CW77 178 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 ANKRD28O15084 1053 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 PLPP2O43688 288 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 PLOD3O60568 738 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 KCNK5O95279 499 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 NADKO95544 446 aaPredicted RBP2.81□□□□□ -1.96
SCFD1-218ENST00000556256 EML2O95834 649 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 CLPTM1O96005 669 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 FRMD6-AS1P0C7T7 363 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 CLDN20P56880 219 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 TRA2BP62995 288 aaKnown RBP2.81□□□□□ -1.96
SCFD1-218ENST00000556256 CDC16Q13042 620 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 KCNC3Q14003 757 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 DLG2Q15700 870 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 C15orf59Q2T9L4 293 aaPredicted RBP2.81□□□□□ -1.96
SCFD1-218ENST00000556256 TPRG1Q6ZUI0 275 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 PLEKHM3Q6ZWE6 761 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 Q75L30 129 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 CEP97Q8IW35 865 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 MINDY1Q8N5J2 469 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 JAKMIP2Q96AA8 810 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 SLC22A12Q96S37 553 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 PAFAH2Q99487 392 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 SLF1Q9BQI6 1058 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 PIGQQ9BRB3 760 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 KIFC3Q9BVG8 833 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 MRPL1Q9BYD6 325 aaKnown RBP2.81□□□□□ -1.96
SCFD1-218ENST00000556256 PPIL3Q9H2H8 161 aaKnown RBP2.81□□□□□ -1.96
SCFD1-218ENST00000556256 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP2.81□□□□□ -1.96
SCFD1-218ENST00000556256 PSD3Q9NYI0 1048 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 MRPL15Q9P015 296 aaKnown RBP2.81□□□□□ -1.96
SCFD1-218ENST00000556256 KLHL20Q9Y2M5 609 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 RPS6KL1Q9Y6S9 549 aa2.81□□□□□ -1.96
SCFD1-218ENST00000556256 ZNF646O15015 1829 aaPredicted RBP2.8□□□□□ -1.96
SCFD1-218ENST00000556256 ZNF541Q9H0D2 1346 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 LRRC72A6NJI9 287 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 MAGEB17A8MXT2 336 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 PLOD2O00469 737 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 P4HA2O15460 535 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 ZNF217O75362 1048 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 GPC4O75487 556 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 GH2P01242 217 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 CENPBP07199 599 aaPredicted RBP2.8□□□□□ -1.96
SCFD1-218ENST00000556256 HSP90AA1P07900 732 aaKnown RBP2.8□□□□□ -1.96
SCFD1-218ENST00000556256 FAM157CP0CG43 387 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 HRH2P25021 359 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 SLC6A12P48065 614 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 SNRPD1P62314 119 aaKnown RBP2.8□□□□□ -1.96
SCFD1-218ENST00000556256 COG7P83436 770 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 MBTD1Q05BQ5 628 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 GRAPQ13588 217 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 CTU2Q2VPK5 515 aaKnown RBP2.8□□□□□ -1.96
SCFD1-218ENST00000556256 GLIPR1L2Q4G1C9 344 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 SLC25A30Q5SVS4 291 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 CFAP58Q5T655 872 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 FAM109BQ6ICB4 259 aaPredicted RBP2.8□□□□□ -1.96
SCFD1-218ENST00000556256 CCDC190Q86UF4 302 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 ADIPOR2Q86V24 386 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 GPR180Q86V85 440 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 DNAAF5Q86Y56 855 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 PM20D2Q8IYS1 436 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 GCSAMQ8N6F7 178 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 ZNF611Q8N823 705 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 PTPMT1Q8WUK0 201 aaPredicted RBP2.8□□□□□ -1.96
SCFD1-218ENST00000556256 ZNF622Q969S3 477 aaKnown RBP eCLIP2.8□□□□□ -1.96
SCFD1-218ENST00000556256 MOAP1Q96BY2 351 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 PRAC1Q96KF2 57 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 NUDCD1Q96RS6 583 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 ABHD1Q96SE0 405 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 LRMDAQ9H2I8 198 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 OSGEPL1Q9H4B0 414 aa2.8□□□□□ -1.96
SCFD1-218ENST00000556256 DENND2DQ9H6A0 471 aaPredicted RBP2.8□□□□□ -1.96
SCFD1-218ENST00000556256 ZNF71Q9NQZ8 489 aaPredicted RBP2.8□□□□□ -1.96
SCFD1-218ENST00000556256 TSPYL4Q9UJ04 414 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms