RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 TBX21Q9UL17 535 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 DLGAP4Q9Y2H0 992 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 PTGES3LE9PB15 166 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 IFRD1O00458 451 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 TSPAN6O43657 245 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 MLYCDO95822 493 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 PDYNP01213 254 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 ATP5BP06576 529 aaKnown RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 FAM58BPP0C7Q3 252 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 IDO1P14902 403 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 EN2P19622 333 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 FASP25445 335 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 VARSP26640 1264 aaKnown RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 MAP4P27816 1152 aaKnown RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 PPM1FP49593 454 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 CSRP3P50461 194 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 ADARP55265 1226 aaKnown RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 AP1S1P61966 158 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 RHDQ02161 417 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 GRM2Q14416 872 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 INPP5AQ14642 412 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 NADK2Q4G0N4 442 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 LIN52Q52LA3 116 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 FNDC3BQ53EP0 1204 aaKnown RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 CARD16Q5EG05 197 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 XKR6Q5GH73 641 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 TTC33Q6PID6 262 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 BLOC1S3Q6QNY0 202 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 ENPP6Q6UWR7 440 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 GET4Q7L5D6 327 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 ADCK2Q7Z695 626 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 C11orf74Q86VG3 221 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 PLD3Q8IV08 490 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 MMAAQ8IVH4 418 aaKnown RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 STK40Q8N2I9 435 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 GPR150Q8NGU9 434 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 IRF7Q92985 503 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 BIRC7Q96CA5 298 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 AP2M1Q96CW1 435 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 APIPQ96GX9 242 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 MPP4Q96JB8 637 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 TCF12Q99081 682 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 P2RY13Q9BPV8 354 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 DPH2Q9BQC3 489 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 CHID1Q9BWS9 393 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 TRIM54Q9BYV2 358 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 OR2AG1Q9H205 316 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 OSGEPL1Q9H4B0 414 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 ZNF385DQ9H6B1 395 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 RPF2Q9H7B2 306 aaKnown RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 LRTM1Q9HBL6 345 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 SLC6A13Q9NSD5 602 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 GEMIN8Q9NWZ8 242 aaKnown RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 PDE10AQ9Y233 779 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 EIF3LQ9Y262 564 aaKnown RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 OR51B4Q9Y5P0 310 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 GPR45Q9Y5Y3 372 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 DOCK9Q9BZ29 2069 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 GNG14A0A1W2PPG7 69 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 ASPDHA6ND91 283 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 K7ESM1 405 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 FXYD1O00168 92 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 GAPDHSO14556 408 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 CLOCKO15516 846 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 PCDH8O95206 1070 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 FKBP9O95302 570 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 SNAP29O95721 258 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 OR56A5P0C7T3 313 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 CEBPBP17676 345 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 ACRV1P26436 265 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 MAT2AP31153 395 aaKnown RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 POLR2IP36954 125 aaKnown RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 ST8SIA6P61647 398 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 MYBPC1Q00872 1141 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 B4GALNT1Q00973 533 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 ACVR1Q04771 509 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 VAC14Q08AM6 782 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 RFTN1Q14699 578 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 CNPY1Q3B7I2 92 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 TTLL9Q3SXZ7 439 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 TMEM31Q5JXX7 168 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 RAET1GQ6H3X3 334 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 SLC30A9Q6PML9 568 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 TBPL2Q6SJ96 375 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 SPESP1Q6UW49 350 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 TPRG1Q6ZUI0 275 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 FKBP9P1Q75LS8 142 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 RD3Q7Z3Z2 195 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 TMEM199Q8N511 208 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 JPH3Q8WXH2 748 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 SNX19Q92543 992 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 TPD52L3Q96J77 140 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 MAGED4Q96JG8 741 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 LRRC3BQ96PB8 259 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 HAUS8Q9BT25 410 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 MAGEE1Q9HCI5 957 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 PAK6Q9NQU5 681 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 SPATS2LQ9NUQ6 558 aaKnown RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 GPRC5BQ9NZH0 403 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 C6orf203Q9P0P8 240 aaPredicted RBP5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms