RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 TFAP2CQ92754 450 aa18.14■□□□□ 0.49
PRPF40B-208ENST00000548436 MTFMTQ96DP5 389 aaKnown RBP18.14■□□□□ 0.49
PRPF40B-208ENST00000548436 ZNF641Q96N77 438 aaPredicted RBP18.14■□□□□ 0.49
PRPF40B-208ENST00000548436 BBS2Q9BXC9 721 aa18.14■□□□□ 0.49
PRPF40B-208ENST00000548436 ANKRD60Q9BZ19 345 aa18.14■□□□□ 0.49
PRPF40B-208ENST00000548436 CEP44Q9C0F1 390 aa18.14■□□□□ 0.49
PRPF40B-208ENST00000548436 ZFP14Q9HCL3 533 aa18.14■□□□□ 0.49
PRPF40B-208ENST00000548436 ARL15Q9NXU5 204 aa18.14■□□□□ 0.49
PRPF40B-208ENST00000548436 KLHL42Q9P2K6 505 aa18.14■□□□□ 0.49
PRPF40B-208ENST00000548436 ZNHIT2Q9UHR6 403 aa18.14■□□□□ 0.49
PRPF40B-208ENST00000548436 ANAPC2Q9UJX6 822 aa18.14■□□□□ 0.49
PRPF40B-208ENST00000548436 OAZ3Q9UMX2 235 aa18.14■□□□□ 0.49
PRPF40B-208ENST00000548436 EIF3LQ9Y262 564 aaKnown RBP18.14■□□□□ 0.49
PRPF40B-208ENST00000548436 ACOX3O15254 700 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 PABPC1P11940 636 aaKnown RBP18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 PFKLP17858 780 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 ERVFC1P60507 584 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 HSPA14Q0VDF9 509 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 TEAD2Q15562 447 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 ATP6AP1Q15904 470 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 PROSER1Q86XN7 944 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 VRK3Q8IV63 474 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 LIX1Q8N485 282 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 MFSD2AQ8NA29 543 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 USP7Q93009 1102 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 ULK4Q96C45 1275 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 LINC00597Q9H2U6 94 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 OLAHQ9NV23 265 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 NDUFA13Q9P0J0 144 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 PCDHB3Q9Y5E6 796 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 HIDE1A8MVS5 230 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 MOSPD3O75425 235 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 MT-ND1P03886 318 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 OR56A5P0C7T3 313 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 UMPSP11172 480 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 GNPDA1P46926 289 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 GBX1Q14549 363 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 SMU1Q2TAY7 513 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 GLYATQ6IB77 296 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 SUSD1Q6UWL2 747 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 UBE2R2Q712K3 238 aaPredicted RBP18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 ADIPOR2Q86V24 386 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 OR2A12Q8NGT7 310 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 SLC32A1Q9H598 525 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 LRTM1Q9HBL6 345 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 VAPAQ9P0L0 249 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 PADI4Q9UM07 663 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 V9GYQ6 96 aa18.13■□□□□ 0.49
PRPF40B-208ENST00000548436 DFNA5O60443 496 aa18.12■□□□□ 0.49
PRPF40B-208ENST00000548436 SEC22BO75396 215 aa18.12■□□□□ 0.49
PRPF40B-208ENST00000548436 RFPL2O75678 378 aa18.12■□□□□ 0.49
PRPF40B-208ENST00000548436 FCGR1AP12314 374 aa18.12■□□□□ 0.49
PRPF40B-208ENST00000548436 MAD2L1Q13257 205 aaPredicted RBP18.12■□□□□ 0.49
PRPF40B-208ENST00000548436 IMPG1Q17R60 797 aa18.12■□□□□ 0.49
PRPF40B-208ENST00000548436 FAM174BQ3ZCQ3 159 aa18.12■□□□□ 0.49
PRPF40B-208ENST00000548436 TMEM215Q68D42 235 aa18.12■□□□□ 0.49
PRPF40B-208ENST00000548436 GDPD4Q6W3E5 623 aa18.12■□□□□ 0.49
PRPF40B-208ENST00000548436 SPRED1Q7Z699 444 aa18.12■□□□□ 0.49
PRPF40B-208ENST00000548436 DTWD1Q8N5C7 304 aa18.12■□□□□ 0.49
PRPF40B-208ENST00000548436 KRTCAP2Q8N6L1 136 aa18.12■□□□□ 0.49
PRPF40B-208ENST00000548436 SLC13A3Q8WWT9 602 aa18.12■□□□□ 0.49
PRPF40B-208ENST00000548436 IRF7Q92985 503 aa18.12■□□□□ 0.49
PRPF40B-208ENST00000548436 SEPHS2Q99611 448 aa18.12■□□□□ 0.49
PRPF40B-208ENST00000548436 TCF25Q9BQ70 676 aa18.12■□□□□ 0.49
PRPF40B-208ENST00000548436 C9orf16Q9BUW7 83 aa18.12■□□□□ 0.49
PRPF40B-208ENST00000548436 SMOXQ9NWM0 555 aa18.12■□□□□ 0.49
PRPF40B-208ENST00000548436 PLXNA2O75051 1894 aa18.12■□□□□ 0.49
PRPF40B-208ENST00000548436 KANSL1LA0AUZ9 987 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 VILLO15195 856 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 MTX2O75431 263 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 KCNH1O95259 989 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 CLDN9O95484 217 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 GNAO1P09471 354 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 TYRP14679 529 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 GGT5P36269 586 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 CPSF6Q16630 551 aaKnown RBP eCLIP18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 SLC5A9Q2M3M2 681 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 SLC44A4Q53GD3 710 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 KRT80Q6KB66 452 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 SERPINA13PQ6UXR4 307 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 RBM44Q6ZP01 1051 aaKnown RBP18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 TBC1D21Q8IYX1 336 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 GTF2H4Q92759 462 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 PAWRQ96IZ0 340 aaKnown RBP18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 SLC12A9Q9BXP2 914 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 DPY30Q9C005 99 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 TRIM4Q9C037 500 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 RNF103-CHMP3A0A140T963 221 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 KRT87PA6NCN2 255 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 H3BNH8 94 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 H6PDO95479 791 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 ATP1B2P14415 290 aaPredicted RBP18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 PYCR3Q53H96 274 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 CDKL4Q5MAI5 379 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 SPANXN4Q5MJ08 99 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 ZDHHC20Q5W0Z9 365 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 ZFAND2BQ8WV99 257 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 SKA2Q8WVK7 121 aaPredicted RBP18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 ASB11Q8WXH4 323 aa18.11■□□□□ 0.49
PRPF40B-208ENST00000548436 DGCR14Q96DF8 476 aaKnown RBP18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms