RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 MVB12BQ9H7P6 319 aa9.46□□□□□ -0.9
YBX3-212ENST00000542002 IARS2Q9NSE4 1012 aaKnown RBP9.46□□□□□ -0.9
YBX3-212ENST00000542002 SIDT1Q9NXL6 827 aaKnown RBP9.46□□□□□ -0.9
YBX3-212ENST00000542002 SLC39A1Q9NY26 324 aa9.46□□□□□ -0.9
YBX3-212ENST00000542002 GRHL1Q9NZI5 618 aa9.46□□□□□ -0.9
YBX3-212ENST00000542002 SLC17A6Q9P2U8 582 aa9.46□□□□□ -0.9
YBX3-212ENST00000542002 CIDEBQ9UHD4 219 aa9.46□□□□□ -0.9
YBX3-212ENST00000542002 PLAGL1Q9UM63 463 aa9.46□□□□□ -0.9
YBX3-212ENST00000542002 ICKQ9UPZ9 632 aa9.46□□□□□ -0.9
YBX3-212ENST00000542002 RUVBL2Q9Y230 463 aaKnown RBP9.46□□□□□ -0.9
YBX3-212ENST00000542002 HEBP2Q9Y5Z4 205 aa9.46□□□□□ -0.9
YBX3-212ENST00000542002 DSPP15924 2871 aaKnown RBP9.46□□□□□ -0.9
YBX3-212ENST00000542002 KRT87PA6NCN2 255 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 BTN3A1O00481 513 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 AHSGP02765 367 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 FOLR1P15328 257 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 PGAM1P18669 254 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 PAMP19021 973 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 OGNP20774 298 aaKnown RBP9.45□□□□□ -0.9
YBX3-212ENST00000542002 MLLT3P42568 568 aaPredicted RBP9.45□□□□□ -0.9
YBX3-212ENST00000542002 CLCN7P51798 805 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 PGGT1BP53609 377 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 PCBP4P57723 403 aaKnown RBP9.45□□□□□ -0.9
YBX3-212ENST00000542002 CBLBQ13191 982 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 THOC5Q13769 683 aaKnown RBP9.45□□□□□ -0.9
YBX3-212ENST00000542002 GBX1Q14549 363 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 TRMT10BQ6PF06 316 aaKnown RBP9.45□□□□□ -0.9
YBX3-212ENST00000542002 UNC5AQ6ZN44 842 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 PRSS42Q7Z5A4 293 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 LRRC6Q86X45 466 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 DTX1Q86Y01 620 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 ANKMY2Q8IV38 441 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.45□□□□□ -0.9
YBX3-212ENST00000542002 ZNF248Q8NDW4 579 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 OR5K2Q8NHB8 316 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 CFAP61Q8NHU2 1237 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 GIMAP7Q8NHV1 300 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 FLVCR1-AS1Q8TAF5 88 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 ASZ1Q8WWH4 475 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 SLC41A2Q96JW4 573 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 TAAR9Q96RI9 348 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 ZMYND15Q9H091 742 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 DPH5Q9H2P9 285 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 SRMSQ9H3Y6 488 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 FBXO8Q9NRD0 319 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 LATS2Q9NRM7 1088 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 SPHK1Q9NYA1 384 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 GNPTGQ9UJJ9 305 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 CDC23Q9UJX2 597 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 FBXO5Q9UKT4 447 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 ACSL6Q9UKU0 697 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 CHMP2BQ9UQN3 213 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 ASF1AQ9Y294 204 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 PCDHGA3Q9Y5H0 932 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 NFS1Q9Y697 457 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 APC2O95996 2303 aa9.45□□□□□ -0.9
YBX3-212ENST00000542002 NBEAQ8NFP9 2946 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 LOC400499M0QZD8 3231 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 FAM187AA6NFU0 413 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 SLC9B1P1A6NJY1 282 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 E7ESA3 106 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 TOX3O15405 576 aaPredicted RBP9.44□□□□□ -0.9
YBX3-212ENST00000542002 KLK10O43240 276 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 RASSF9O75901 435 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 URI1O94763 535 aaPredicted RBP9.44□□□□□ -0.9
YBX3-212ENST00000542002 ESR1P03372 595 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 PKMP14618 531 aaKnown RBP9.44□□□□□ -0.9
YBX3-212ENST00000542002 ZNF28P17035 718 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 NELFEP18615 380 aaKnown RBP9.44□□□□□ -0.9
YBX3-212ENST00000542002 WT1P19544 449 aaPredicted RBP9.44□□□□□ -0.9
YBX3-212ENST00000542002 CHRM3P20309 590 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 NDUFS1P28331 727 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 PRDX3P30048 256 aaKnown RBP9.44□□□□□ -0.9
YBX3-212ENST00000542002 PEBP1P30086 187 aaKnown RBP9.44□□□□□ -0.9
YBX3-212ENST00000542002 ABCG1P45844 678 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 CARSP49589 748 aaKnown RBP9.44□□□□□ -0.9
YBX3-212ENST00000542002 SLC7A5Q01650 507 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 PLOD1Q02809 727 aaPredicted RBP9.44□□□□□ -0.9
YBX3-212ENST00000542002 HIF1AQ16665 826 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 SYTL3Q4VX76 610 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 DNAJC21Q5F1R6 531 aaKnown RBP9.44□□□□□ -0.9
YBX3-212ENST00000542002 ACSBG2Q5FVE4 666 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 SPANXN3Q5MJ09 141 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 TEDDM1Q5T9Z0 273 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 RNF187Q5TA31 235 aaPredicted RBP9.44□□□□□ -0.9
YBX3-212ENST00000542002 STEAP4Q687X5 459 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 ZNF449Q6P9G9 518 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 ZDHHC24Q6UX98 284 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 CYHR1Q6ZMK1 362 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 OTOAQ7RTW8 1153 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 TIPARPQ7Z3E1 657 aaKnown RBP9.44□□□□□ -0.9
YBX3-212ENST00000542002 KCNMB4Q86W47 210 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 AMIGO1Q86WK6 493 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 FAM20CQ8IXL6 584 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 TBC1D21Q8IYX1 336 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 PDIK1LQ8N165 341 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 C2orf73Q8N5S3 287 aaPredicted RBP9.44□□□□□ -0.9
YBX3-212ENST00000542002 LINC01555Q8NAE3 123 aa9.44□□□□□ -0.9
YBX3-212ENST00000542002 SIDT2Q8NBJ9 832 aaKnown RBP9.44□□□□□ -0.9
YBX3-212ENST00000542002 C2CD4AQ8NCU7 369 aaPredicted RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms