RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 APOL2Q9BQE5 337 aa11.63□□□□□ -0.55
CBX3P4-202ENST00000540428 HEMGNQ9BXL5 484 aa11.63□□□□□ -0.55
CBX3P4-202ENST00000540428 ACTR10Q9NZ32 417 aa11.63□□□□□ -0.55
CBX3P4-202ENST00000540428 SPTBN1Q01082 2364 aaKnown RBP11.63□□□□□ -0.55
CBX3P4-202ENST00000540428 ICE1Q9Y2F5 2266 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 DDX3YO15523 660 aaKnown RBP11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 PJA2O43164 708 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 LDB2O43679 373 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 KLF7O75840 302 aaPredicted RBP11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 AP2A2O94973 939 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 RBP3P10745 1247 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 MC4RP32245 332 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 CTNNA1P35221 906 aaKnown RBP11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 PTPN7P35236 360 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 TMPRSS15P98073 1019 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 OTUD4Q01804 1114 aaKnown RBP11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 ATP1A4Q13733 1029 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 FAM69BQ5VUD6 431 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 RHBDD2Q6NTF9 364 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 SPESP1Q6UW49 350 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 MRGPREQ86SM8 312 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 HOOK3Q86VS8 718 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 PROKR1Q8TCW9 393 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 N4BP2L2Q92802 583 aaPredicted RBP11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 TCTN2Q96GX1 697 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 CALR3Q96L12 384 aaKnown RBP11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 SPATA13Q96N96 652 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 TBL1YQ9BQ87 522 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 FAM96AQ9H5X1 160 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 C10orf88Q9H8K7 445 aa11.62□□□□□ -0.55
CBX3P4-202ENST00000540428 RP1L1Q8IWN7 2480 aaPredicted RBP11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 A6NL46 340 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 H3BMH7 237 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 QSOX1O00391 747 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 LIN7AO14910 233 aaPredicted RBP11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 KCNN4O15554 427 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 OR2B3O76000 313 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 IPO13O94829 963 aaKnown RBP11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 ALPPP05187 535 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 PVRP15151 417 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 CTNNA2P26232 953 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 PDHA2P29803 388 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 SHMT2P34897 504 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 EIF3EP60228 445 aaKnown RBP11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 TBX2Q13207 712 aaPredicted RBP11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 MYBPC3Q14896 1274 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 EIF2S3LQ2VIR3 472 aaKnown RBP11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 PRR30Q53SZ7 412 aaPredicted RBP11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 HIST2H2BCQ6DN03 193 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 IGFL3Q6UXB1 125 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 SERPINA9Q86WD7 417 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 CCDC170Q8IYT3 715 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 IQCKQ8N0W5 287 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 C19orf47Q8N9M1 422 aaKnown RBP11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 PHC3Q8NDX5 983 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 CCDC110Q8TBZ0 833 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 DNAJC1Q96KC8 554 aaKnown RBP11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 HGH1Q9BTY7 390 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 MFRPQ9BY79 579 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 OSBPL8Q9BZF1 889 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 KLHL25Q9H0H3 589 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 LUC7LQ9NQ29 371 aaKnown RBP11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 CASS4Q9NQ75 786 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 NLE1Q9NVX2 485 aaPredicted RBP11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 LUZP4Q9P127 313 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 SRPK3Q9UPE1 567 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 B3GNT3Q9Y2A9 372 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 PCDHA3Q9Y5H8 950 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 PCDHA13Q9Y5I0 950 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 TNRC6AQ8NDV7 1962 aaKnown RBP11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 MED13Q9UHV7 2174 aa11.61□□□□□ -0.55
CBX3P4-202ENST00000540428 ESPL1Q14674 2120 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 SHANK1Q9Y566 2161 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 MACROD2A1Z1Q3 448 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 WIPF3A6NGB9 483 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 PEX12O00623 359 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 RNF224P0DH78 156 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 OTX2P32243 289 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 CETN2P41208 172 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 FOLR3P41439 243 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 NSG1P42857 185 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 GABRA4P48169 554 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 CDKN1CP49918 316 aaPredicted RBP11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 SOX8P57073 446 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 DCDP81605 110 aaKnown RBP11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 PLOD1Q02809 727 aaPredicted RBP11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 CACNG1Q06432 222 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 PRKG2Q13237 762 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 MRPL49Q13405 166 aaKnown RBP11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 ITIH4Q14624 930 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 SPA17Q15506 151 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 PLEKHN1Q494U1 663 aaPredicted RBP11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 ZRANB3Q5FWF4 1079 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 DCAF10Q5QP82 559 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 LYPLAL1Q5VWZ2 237 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 KCTD11Q693B1 232 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 TLDC1Q6P9B6 456 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 DARS2Q6PI48 645 aaKnown RBP11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 TMTC1Q8IUR5 882 aa11.6□□□□□ -0.55
CBX3P4-202ENST00000540428 TBC1D21Q8IYX1 336 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms