RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	GPRC6A	Q5T6X5	926 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	AGAP7P	Q5VUJ5	663 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	PRAMEF13	Q5VWM6	474 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	MLIP	Q5VWP3	458 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	MRPL14	Q6P1L8	145 aa	Known RBP	12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	MTFR2	Q6P444	385 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	FBXO38	Q6PIJ6	1188 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	PPP1R32	Q7Z5V6	425 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	BCORP1	Q8N888	145 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	LCN9	Q8WX39	176 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	N4BP2L2	Q92802	583 aa	Predicted RBP	12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	AGAP4	Q96P64	663 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	DESI2	Q9BSY9	194 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	TSGA10	Q9BZW7	698 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	CHRNA10	Q9GZZ6	450 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	ZBTB20	Q9HC78	741 aa	Predicted RBP	12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	BPIFA1	Q9NP55	256 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	LUC7L	Q9NQ29	371 aa	Known RBP	12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	OLAH	Q9NV23	265 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	HACD3	Q9P035	362 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	LCMT1	Q9UIC8	334 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	REXO2	Q9Y3B8	237 aa	Known RBP	12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	CSAG2	Q9Y5P2	127 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079		H3BMH7	237 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	AURKA	O14965	403 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	PPP1R12A	O14974	1030 aa	Predicted RBP	12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	KIF5C	O60282	957 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	OR2B3	O76000	313 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	COX6B1	P14854	86 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	MSH3	P20585	1137 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	AKT1	P31749	480 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	SSR1	P43307	286 aa	Known RBP	12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	TNNT3	P45378	269 aa	Predicted RBP	12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	SLC10A2	Q12908	348 aa	Predicted RBP	12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	FNBP1L	Q5T0N5	605 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	FAM151B	Q6UXP7	276 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	RPTN	Q6XPR3	784 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	SPNS3	Q6ZMD2	512 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	CDHR3	Q6ZTQ4	885 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	PARP9	Q8IXQ6	854 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	ZNF808	Q8N4W9	903 aa	Predicted RBP	12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	PQLC3	Q8N755	202 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	OR4E2	Q8NGC2	313 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	DNAJB14	Q8TBM8	379 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	HM13	Q8TCT9	377 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	ITLN2	Q8WWU7	325 aa	Predicted RBP	12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	FKBP10	Q96AY3	582 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	VPS50	Q96JG6	964 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	RMDN2	Q96LZ7	410 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	TRIM56	Q9BRZ2	755 aa	Known RBP	12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	TFB2M	Q9H5Q4	396 aa	Known RBP	12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	L2HGDH	Q9H9P8	463 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	MRM3	Q9HC36	420 aa	Known RBP	12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	TXLNG	Q9NUQ3	528 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	PKP3	Q9Y446	797 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	SPO11	Q9Y5K1	396 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	F8	P00451	2351 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	POLE	Q07864	2286 aa		12.02	□□□□□ -0.49
CAPN1-223	ENST00000533079	ZFHX3	Q15911	3703 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079		A0A0A6YYK5	440 aa	Predicted RBP	12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	BTN3A1	O00481	513 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	DDX3Y	O15523	660 aa	Known RBP	12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	ZSCAN9	O15535	394 aa	Predicted RBP	12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	AKR1B10	O60218	316 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	JRK	O75564	520 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	MT-CYB	P00156	380 aa	Predicted RBP	12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	UMOD	P07911	640 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	CBSL	P0DN79	551 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	MMP11	P24347	488 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	CBS	P35520	551 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	AP1B1	Q10567	949 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	SLC18A3	Q16572	532 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	HIF1A	Q16665	826 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	ZNF630	Q2M218	657 aa	Predicted RBP	12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	TLDC1	Q6P9B6	456 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	SYT10	Q6XYQ8	523 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	GLT6D1	Q7Z4J2	308 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	HOOK3	Q86VS8	718 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	VSIG1	Q86XK7	387 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	C19orf47	Q8N9M1	422 aa	Known RBP	12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	ACRBP	Q8NEB7	543 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	SPDYE1	Q8NFV5	336 aa	Predicted RBP	12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	MYRIP	Q8NFW9	859 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	DENND1A	Q8TEH3	1009 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	BTBD6	Q96KE9	485 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	THAP2	Q9H0W7	228 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	IL17C	Q9P0M4	197 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	FBXL4	Q9UKA2	621 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	PCDHA13	Q9Y5I0	950 aa		12.01	□□□□□ -0.49
CAPN1-223	ENST00000533079	DCHS2	Q6V1P9	2916 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	HIVEP1	P15822	2718 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	TACC2	O95359	2948 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	BTNL10	A8MVZ5	291 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	IFRD1	O00458	451 aa	Predicted RBP	12	□□□□□ -0.49
CAPN1-223	ENST00000533079	PCDH17	O14917	1159 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	GPR39	O43194	453 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	EPO	P01588	193 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	CYP1A2	P05177	515 aa		12	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms