RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 AKAP8O43823 692 aaKnown RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 GRIN3BO60391 1043 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 PLIN3O60664 434 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 LRCH4O75427 683 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 LYPLA1O75608 230 aaPredicted RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 SOAT2O75908 522 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 ZBTB7AO95365 584 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 HSPA4LO95757 839 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 NR3C1P04150 777 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 HEXBP07686 556 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 MYL3P08590 195 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 UQCRFS1P1P0C7P4 283 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 UMPSP11172 480 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 HLA-EP13747 358 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 PRF1P14222 555 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 HOXB8P17481 243 aaPredicted RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 PRKCHP24723 683 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 MYL9P24844 172 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 DPP6P42658 865 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 TECP42680 631 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 FMO5P49326 533 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 CLCN4P51793 760 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 MAP2K6P52564 334 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 ARFIP1P53367 373 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 ATXN3P54252 364 aaPredicted RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 CASP7P55210 303 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 KCNK10P57789 538 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 C21orf58P58505 322 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 SPCS3P61009 180 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 DSC1Q08554 894 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 TROAPQ12815 778 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 STX4Q12846 297 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 SLAMF1Q13291 335 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 IL18R1Q13478 541 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 ALCAMQ13740 583 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 CAPRIN1Q14444 709 aaKnown RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 PUM1Q14671 1186 aaKnown RBP eCLIP5.71□□□□□ -1.5
CD44-225ENST00000527326 SSPNQ14714 243 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 GRM7Q14831 915 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 PLCL1Q15111 1095 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 QPRTQ15274 297 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 PUM3Q15397 648 aaKnown RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 TAF1CQ15572 869 aaPredicted RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 DUOXA2Q1HG44 320 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 MICAQ29983 383 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 EIF2S3LQ2VIR3 472 aaKnown RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 EPC2Q52LR7 807 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 METTL24Q5JXM2 366 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 DGKKQ5KSL6 1271 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 LAMTOR1Q6IAA8 161 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 LCN8Q6JVE9 175 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 PDE12Q6L8Q7 609 aaKnown RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 LRRC8EQ6NSJ5 796 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 FAM45BPQ6NSW5 357 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 SLC27A4Q6P1M0 643 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 XRRA1Q6P2D8 792 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 ZNF530Q6P9A1 599 aaPredicted RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 NXPE4Q6UWF7 544 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 ADAMTSL4Q6UY14 1074 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 ZCCHC23Q6ZST2 131 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 CHST15Q7LFX5 561 aaPredicted RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 BNIPLQ7Z465 357 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 POLNQ7Z5Q5 900 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 NRARPQ7Z6K4 114 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 SYVN1Q86TM6 617 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 CCDC190Q86UF4 302 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 KRT73Q86Y46 540 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 SLFN12Q8IYM2 578 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 CYP4Z2PQ8N1L4 340 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 EIF4E3Q8N5X7 224 aaKnown RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 ARFGAP1Q8N6T3 406 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 OR6M1Q8NGM8 313 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 FAM45AQ8TCE6 357 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 MAGEE2Q8TD90 523 aaPredicted RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 ASZ1Q8WWH4 475 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 IPCEF1Q8WWN9 437 aaPredicted RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 FCGR1BQ92637 280 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 DDX17Q92841 729 aaKnown RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 KAT5Q92993 513 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 FUBP1Q96AE4 644 aaKnown RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 LGALS12Q96DT0 336 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 PGAP3Q96FM1 320 aaPredicted RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 TEPSINQ96N21 525 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 OR2A14Q96R47 310 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 GAD1Q99259 594 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 STRA6Q9BX79 667 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 KRTAP9-2Q9BYQ4 174 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 CEP41Q9BYV8 373 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 GPR63Q9BZJ6 419 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 ILKAPQ9H0C8 392 aaPredicted RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 CLEC4MQ9H2X3 399 aaPredicted RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 ELOVL6Q9H5J4 265 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 RNF121Q9H920 327 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 KANSL2Q9H9L4 492 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 RSAD1Q9HA92 442 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 CCNB1IP1Q9NPC3 277 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 KLHL1Q9NR64 748 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 KCNQ5Q9NR82 932 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 TRMT13Q9NUP7 481 aaKnown RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 LYARQ9NX58 379 aaKnown RBP5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms