RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 SYTL2Q9HCH5 934 aa20.21■□□□□ 0.83
CD44-222ENST00000526025 MTO1Q9Y2Z2 717 aaKnown RBP20.21■□□□□ 0.83
CD44-222ENST00000526025 IKBKGQ9Y6K9 419 aa20.21■□□□□ 0.83
CD44-222ENST00000526025 EXOC1LA0A1B0GW35 172 aa20.2■□□□□ 0.82
CD44-222ENST00000526025 A0A1W2PQM1 296 aa20.2■□□□□ 0.82
CD44-222ENST00000526025 DUX1O43812 170 aa20.2■□□□□ 0.82
CD44-222ENST00000526025 PSIP1O75475 530 aaKnown RBP20.2■□□□□ 0.82
CD44-222ENST00000526025 WISP3O95389 354 aaPredicted RBP20.2■□□□□ 0.82
CD44-222ENST00000526025 RPLP0P05388 317 aaKnown RBP20.2■□□□□ 0.82
CD44-222ENST00000526025 ZNF37AP17032 561 aaPredicted RBP20.2■□□□□ 0.82
CD44-222ENST00000526025 SLC12A2P55011 1212 aa20.2■□□□□ 0.82
CD44-222ENST00000526025 OR1D5P58170 312 aa20.2■□□□□ 0.82
CD44-222ENST00000526025 IL2P60568 153 aa20.2■□□□□ 0.82
CD44-222ENST00000526025 INSM1Q01101 510 aaPredicted RBP20.2■□□□□ 0.82
CD44-222ENST00000526025 MAP9Q49MG5 647 aa20.2■□□□□ 0.82
CD44-222ENST00000526025 KLHL35Q6PF15 583 aa20.2■□□□□ 0.82
CD44-222ENST00000526025 CYHR1Q6ZMK1 362 aa20.2■□□□□ 0.82
CD44-222ENST00000526025 RAB44Q7Z6P3 723 aaPredicted RBP20.2■□□□□ 0.82
CD44-222ENST00000526025 CPNE9Q8IYJ1 553 aa20.2■□□□□ 0.82
CD44-222ENST00000526025 MREGQ8N565 214 aa20.2■□□□□ 0.82
CD44-222ENST00000526025 MAGEC3Q8TD91 643 aa20.2■□□□□ 0.82
CD44-222ENST00000526025 CCDC77Q9BR77 488 aa20.2■□□□□ 0.82
CD44-222ENST00000526025 RAB33BQ9H082 229 aa20.2■□□□□ 0.82
CD44-222ENST00000526025 PRAMEF33A0A0G2JMD5 474 aa20.19■□□□□ 0.82
CD44-222ENST00000526025 FAM155BO75949 473 aa20.19■□□□□ 0.82
CD44-222ENST00000526025 CPNE6O95741 557 aa20.19■□□□□ 0.82
CD44-222ENST00000526025 TSPAN12O95859 305 aa20.19■□□□□ 0.82
CD44-222ENST00000526025 STMN1P16949 149 aa20.19■□□□□ 0.82
CD44-222ENST00000526025 CD1CP29017 333 aa20.19■□□□□ 0.82
CD44-222ENST00000526025 ALDH4A1P30038 563 aa20.19■□□□□ 0.82
CD44-222ENST00000526025 MSH2P43246 934 aa20.19■□□□□ 0.82
CD44-222ENST00000526025 CCL7P80098 99 aa20.19■□□□□ 0.82
CD44-222ENST00000526025 ABRQ12979 859 aa20.19■□□□□ 0.82
CD44-222ENST00000526025 SP140Q13342 867 aa20.19■□□□□ 0.82
CD44-222ENST00000526025 SPIDRQ14159 915 aa20.19■□□□□ 0.82
CD44-222ENST00000526025 USP10Q14694 798 aaKnown RBP20.19■□□□□ 0.82
CD44-222ENST00000526025 WDR74Q6RFH5 385 aaPredicted RBP20.19■□□□□ 0.82
CD44-222ENST00000526025 TMPRSS12Q86WS5 348 aa20.19■□□□□ 0.82
CD44-222ENST00000526025 NKAPQ8N5F7 415 aaKnown RBP20.19■□□□□ 0.82
CD44-222ENST00000526025 Q8N9G6 341 aaPredicted RBP20.19■□□□□ 0.82
CD44-222ENST00000526025 OR5AR1Q8NGP9 310 aa20.19■□□□□ 0.82
CD44-222ENST00000526025 SKA2Q8WVK7 121 aaPredicted RBP20.19■□□□□ 0.82
CD44-222ENST00000526025 ASB11Q8WXH4 323 aa20.19■□□□□ 0.82
CD44-222ENST00000526025 GRAMD1AQ96CP6 724 aa20.19■□□□□ 0.82
CD44-222ENST00000526025 GFM1Q96RP9 751 aaKnown RBP20.19■□□□□ 0.82
CD44-222ENST00000526025 TBC1D10AQ9BXI6 508 aa20.19■□□□□ 0.82
CD44-222ENST00000526025 CAMSAP3Q9P1Y5 1249 aaPredicted RBP20.19■□□□□ 0.82
CD44-222ENST00000526025 SLC39A10Q9ULF5 831 aa20.19■□□□□ 0.82
CD44-222ENST00000526025 D6RAR5 112 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 GFYI3L273 518 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 KRT38O76015 456 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 UBXN7O94888 489 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 C1orf105O95561 183 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 CATP04040 527 aaKnown RBP20.18■□□□□ 0.82
CD44-222ENST00000526025 C8GP07360 202 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 CAPZBP47756 277 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 RAB10P61026 200 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 PLCL1Q15111 1095 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 UAP1Q16222 522 aaPredicted RBP20.18■□□□□ 0.82
CD44-222ENST00000526025 TTC23LQ6PF05 361 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 DHRS13Q6UX07 377 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 RBM44Q6ZP01 1051 aaKnown RBP20.18■□□□□ 0.82
CD44-222ENST00000526025 ZNF761Q86XN6 746 aaPredicted RBP20.18■□□□□ 0.82
CD44-222ENST00000526025 CEP97Q8IW35 865 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 MYO1HQ8N1T3 1032 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 GALNT15Q8N3T1 639 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 PHC3Q8NDX5 983 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 OR52E1Q8NGJ3 308 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 DCAKDQ8WVC6 231 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 EEF1AKMT1Q8WVE0 214 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 UBLCP1Q8WVY7 318 aaPredicted RBP20.18■□□□□ 0.82
CD44-222ENST00000526025 ISL2Q96A47 359 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 RAD51AP1Q96B01 352 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 AHCYL2Q96HN2 611 aaKnown RBP20.18■□□□□ 0.82
CD44-222ENST00000526025 HGH1Q9BTY7 390 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 RAB11FIP5Q9BXF6 653 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 EPHA6Q9UF33 1036 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 ANKRD12Q6UB98 2062 aa20.18■□□□□ 0.82
CD44-222ENST00000526025 HMX2A2RU54 273 aa20.17■□□□□ 0.82
CD44-222ENST00000526025 MATN2O00339 956 aa20.17■□□□□ 0.82
CD44-222ENST00000526025 SLC16A5O15375 505 aa20.17■□□□□ 0.82
CD44-222ENST00000526025 PROS1P07225 676 aa20.17■□□□□ 0.82
CD44-222ENST00000526025 CRABP2P29373 138 aa20.17■□□□□ 0.82
CD44-222ENST00000526025 SHMT2P34897 504 aa20.17■□□□□ 0.82
CD44-222ENST00000526025 HSD17B3P37058 310 aa20.17■□□□□ 0.82
CD44-222ENST00000526025 SLC26A3P40879 764 aa20.17■□□□□ 0.82
CD44-222ENST00000526025 CSRP3P50461 194 aa20.17■□□□□ 0.82
CD44-222ENST00000526025 RASA2Q15283 850 aa20.17■□□□□ 0.82
CD44-222ENST00000526025 CCDC157Q569K6 752 aa20.17■□□□□ 0.82
CD44-222ENST00000526025 N4BP2L1Q5TBK1 243 aaPredicted RBP20.17■□□□□ 0.82
CD44-222ENST00000526025 LGSNQ5TDP6 509 aa20.17■□□□□ 0.82
CD44-222ENST00000526025 ADGRD1Q6QNK2 874 aa20.17■□□□□ 0.82
CD44-222ENST00000526025 PIWIL4Q7Z3Z4 852 aaKnown RBP20.17■□□□□ 0.82
CD44-222ENST00000526025 DCBLD1Q8N8Z6 715 aa20.17■□□□□ 0.82
CD44-222ENST00000526025 CFAP61Q8NHU2 1237 aa20.17■□□□□ 0.82
CD44-222ENST00000526025 UHMK1Q8TAS1 419 aaKnown RBP20.17■□□□□ 0.82
CD44-222ENST00000526025 LCN9Q8WX39 176 aa20.17■□□□□ 0.82
CD44-222ENST00000526025 LINGO1Q96FE5 620 aa20.17■□□□□ 0.82
CD44-222ENST00000526025 TWSG1Q9GZX9 223 aa20.17■□□□□ 0.82
CD44-222ENST00000526025 GPAMQ9HCL2 828 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms