RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 SLC32A1Q9H598 525 aa9.96□□□□□ -0.82
MCF2-209ENST00000520602 NANOGQ9H9S0 305 aa9.96□□□□□ -0.82
MCF2-209ENST00000520602 MAGEL2Q9UJ55 1249 aa9.96□□□□□ -0.82
MCF2-209ENST00000520602 SCN10AQ9Y5Y9 1956 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 SDK1Q7Z5N4 2213 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 TTC34A8MYJ7 566 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 NME4O00746 187 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 EPN2O95208 641 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 GPX3P22352 226 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 VARSP26640 1264 aaKnown RBP9.95□□□□□ -0.82
MCF2-209ENST00000520602 HLA-FP30511 346 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 INHBCP55103 352 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 RPS14P62263 151 aaKnown RBP9.95□□□□□ -0.82
MCF2-209ENST00000520602 PPIGQ13427 754 aaKnown RBP eCLIP9.95□□□□□ -0.82
MCF2-209ENST00000520602 TLR1Q15399 786 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 BLOC1S3Q6QNY0 202 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 CLVS1Q8IUQ0 354 aaPredicted RBP9.95□□□□□ -0.82
MCF2-209ENST00000520602 C7orf61Q8IZ16 206 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 CHPFQ8IZ52 775 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 ATG16L2Q8NAA4 619 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 PIH1D2Q8WWB5 315 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 CENPNQ96H22 339 aaPredicted RBP9.95□□□□□ -0.82
MCF2-209ENST00000520602 ZFRQ96KR1 1074 aaKnown RBP9.95□□□□□ -0.82
MCF2-209ENST00000520602 LRRC3Q9BY71 257 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 SPHK2Q9NRA0 654 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 FARSBQ9NSD9 589 aaKnown RBP9.95□□□□□ -0.82
MCF2-209ENST00000520602 AIG1Q9NVV5 245 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 THG1LQ9NWX6 298 aaKnown RBP9.95□□□□□ -0.82
MCF2-209ENST00000520602 FADS3Q9Y5Q0 445 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 EPHX1P07099 455 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 CHI3L1P36222 383 aaPredicted RBP9.95□□□□□ -0.82
MCF2-209ENST00000520602 KIR3DL1P43629 444 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 LRP8Q14114 963 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 RFTN2Q52LD8 501 aaPredicted RBP9.95□□□□□ -0.82
MCF2-209ENST00000520602 ZDHHC20Q5W0Z9 365 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 GALNT7Q86SF2 657 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 RETREG3Q86VR2 466 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 OR8D1Q8WZ84 308 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 ABTB1Q969K4 478 aaPredicted RBP9.95□□□□□ -0.82
MCF2-209ENST00000520602 SCRN2Q96FV2 425 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 OR2AG1Q9H205 316 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 MIEF1Q9NQG6 463 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 ZIM2Q9NZV7 527 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 C16orf96A6NNT2 1141 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 PDZK1P1A8MUH7 402 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 HIDE1A8MVS5 230 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 C5orf58C9J3I9 102 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 IFRD1O00458 451 aaPredicted RBP9.95□□□□□ -0.82
MCF2-209ENST00000520602 EI24O14681 340 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 RPS17P08708 135 aaKnown RBP9.95□□□□□ -0.82
MCF2-209ENST00000520602 CR2P20023 1033 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 RFC2P35250 354 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 DPP6P42658 865 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 PHEXP78562 749 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 DYNC1I2Q13409 638 aaKnown RBP9.95□□□□□ -0.82
MCF2-209ENST00000520602 PAGE3Q5JUK9 113 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 RD3Q7Z3Z2 195 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 CYP2U1Q7Z449 544 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 PROSER1Q86XN7 944 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 RGL4Q8IZJ4 473 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 EID3Q8N140 333 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 SFRP1Q8N474 314 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 KRTCAP2Q8N6L1 136 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 CXorf40AQ8TE69 158 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 TIFAQ96CG3 184 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 AURKBQ96GD4 344 aaPredicted RBP9.95□□□□□ -0.82
MCF2-209ENST00000520602 SDR39U1Q9NRG7 319 aaPredicted RBP9.95□□□□□ -0.82
MCF2-209ENST00000520602 COQ6Q9Y2Z9 468 aa9.95□□□□□ -0.82
MCF2-209ENST00000520602 FAM32AQ9Y421 112 aaKnown RBP9.95□□□□□ -0.82
MCF2-209ENST00000520602 MGAMO43451 1857 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 TET1Q8NFU7 2136 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 ELOVL7A1L3X0 281 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 TMEM247A6NEH6 219 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 AQP12BA6NM10 295 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 MANBAO00462 879 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 CLIC3O95833 236 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 LATS1O95835 1130 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 TIMP1P01033 207 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 GPIP06744 558 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 C8GP07360 202 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 MYCLP1P12525 358 aaPredicted RBP9.94□□□□□ -0.82
MCF2-209ENST00000520602 MTHFRP42898 656 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 ATP4BP51164 291 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 IL5RAQ01344 420 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 EMX2Q04743 252 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 FPGSQ05932 587 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 TMED1Q13445 227 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 BRAT1Q6PJG6 821 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 CCDC81Q6ZN84 652 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 AQP12AQ8IXF9 295 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 LKAAEAR1Q8TD35 194 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 ITCHQ96J02 903 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 TOX2Q96NM4 488 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 SIP14410 1827 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 A0A1B0GTL3 188 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 DYTNA2CJ06 578 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 H3BNC9 293 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 SCAMP1O15126 338 aa9.94□□□□□ -0.82
MCF2-209ENST00000520602 PENKP01210 267 aaPredicted RBP9.94□□□□□ -0.82
MCF2-209ENST00000520602 LINGO3P0C6S8 592 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms