RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.16□□□□□ -0.622e-6■■■■■ 54.9
RNF4-216ENST00000511859 THOC3Q96J01 351 aaKnown RBP11.16□□□□□ -0.62
RNF4-216ENST00000511859 NAP1L5Q96NT1 182 aaPredicted RBP11.16□□□□□ -0.62
RNF4-216ENST00000511859 TAAR6Q96RI8 345 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 CCM2Q9BSQ5 444 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 SYT11Q9BT88 431 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 BPIFA1Q9NP55 256 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 IL26Q9NPH9 171 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 TRAV17A0A0B4J275 112 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 DYTNA2CJ06 578 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 C2orf74A8MZ97 194 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 BTN3A3O00478 584 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 SOCS6O14544 535 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 CRYABP02511 175 aaKnown RBP11.16□□□□□ -0.62
RNF4-216ENST00000511859 PIM1P11309 404 aaPredicted RBP11.16□□□□□ -0.62
RNF4-216ENST00000511859 ESRRAP11474 423 aaPredicted RBP11.16□□□□□ -0.62
RNF4-216ENST00000511859 KIR3DL1P43629 444 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 ARG2P78540 354 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 MMRN1Q13201 1228 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 ITGA9Q13797 1035 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 SLC9A5Q14940 896 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 FNBP1LQ5T0N5 605 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 TXNRD3NBQ6F5E7 133 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 KIRREL2Q6UWL6 708 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 LINC00696Q6ZRV3 163 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 APTXQ7Z2E3 356 aaKnown RBP11.16□□□□□ -0.62
RNF4-216ENST00000511859 NT5DC3Q86UY8 548 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 HOOK3Q86VS8 718 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 CNTD1Q8N815 330 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 CCNYQ8ND76 341 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 DENND1AQ8TEH3 1009 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 SPRTNQ9H040 489 aaPredicted RBP11.16□□□□□ -0.62
RNF4-216ENST00000511859 ENKD1Q9H0I2 346 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 TRABDQ9H4I3 376 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 TFB2MQ9H5Q4 396 aaKnown RBP11.16□□□□□ -0.62
RNF4-216ENST00000511859 WDR54Q9H977 334 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 MRM3Q9HC36 420 aaKnown RBP11.16□□□□□ -0.62
RNF4-216ENST00000511859 RTN4Q9NQC3 1192 aaKnown RBP11.16□□□□□ -0.62
RNF4-216ENST00000511859 ABI3Q9P2A4 366 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 DHCR7Q9UBM7 475 aaKnown RBP11.16□□□□□ -0.62
RNF4-216ENST00000511859 SEC14L3Q9UDX4 400 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 INTS1Q8N201 2190 aaKnown RBP11.15□□□□□ -0.62
RNF4-216ENST00000511859 SNRNP200O75643 2136 aaKnown RBP11.15□□□□□ -0.62
RNF4-216ENST00000511859 C19orf84I3L1E1 186 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 BTN3A1O00481 513 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 AURKAO14965 403 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 FANCGO15287 622 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 ZSCAN9O15535 394 aaPredicted RBP11.15□□□□□ -0.63
RNF4-216ENST00000511859 UGT1A9O60656 530 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 KLHL18O94889 574 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 NDST3O95803 873 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 MYBL1P10243 752 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 PVRP15151 417 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 UGT1A6P19224 532 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 UGT1A1P22309 533 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 UGT1A4P22310 534 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 PBLDP30039 288 aaPredicted RBP11.15□□□□□ -0.63
RNF4-216ENST00000511859 SPAM1P38567 509 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 TNFSF10P50591 281 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 ART1P52961 327 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 FOXL2P58012 376 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 ADORA2A-AS1P86434 159 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 SLC25A11Q02978 314 aaKnown RBP11.15□□□□□ -0.63
RNF4-216ENST00000511859 UBXN1Q04323 297 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 SLC14A2Q15849 920 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 PPP2R5EQ16537 467 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 SLC5A12Q1EHB4 618 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 TUBB8Q3ZCM7 444 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 GPRC6AQ5T6X5 926 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 OVCH1Q7RTY7 1134 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 ZNF655Q8N720 491 aaPredicted RBP11.15□□□□□ -0.63
RNF4-216ENST00000511859 NIPA2Q8N8Q9 360 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 HAS2Q92819 552 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 FKBP10Q96AY3 582 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 TRIM11Q96F44 468 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 IMP4Q96G21 291 aaKnown RBP11.15□□□□□ -0.63
RNF4-216ENST00000511859 LINC00615Q96LM1 132 aaPredicted RBP11.15□□□□□ -0.63
RNF4-216ENST00000511859 FERD3LQ96RJ6 166 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 NDC1Q9BTX1 674 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 KLHL25Q9H0H3 589 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 UGT1A7Q9HAW7 530 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 UGT1A10Q9HAW8 530 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 UGT1A8Q9HAW9 530 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 FAM60AQ9NP50 221 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 IFNKQ9P0W0 207 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 NEU2Q9Y3R4 380 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 HS3ST3B1Q9Y662 390 aa11.15□□□□□ -0.63
RNF4-216ENST00000511859 AKAP6Q13023 2319 aa11.14□□□□□ -0.63
RNF4-216ENST00000511859 VPS13CQ709C8 3753 aa11.14□□□□□ -0.63
RNF4-216ENST00000511859 LGALS16A8MUM7 142 aa11.14□□□□□ -0.63
RNF4-216ENST00000511859 KCNK1O00180 336 aa11.14□□□□□ -0.63
RNF4-216ENST00000511859 ALOX12BO75342 701 aa11.14□□□□□ -0.63
RNF4-216ENST00000511859 ONECUT2O95948 504 aa11.14□□□□□ -0.63
RNF4-216ENST00000511859 MT-CYBP00156 380 aaPredicted RBP11.14□□□□□ -0.63
RNF4-216ENST00000511859 CD48P09326 243 aa11.14□□□□□ -0.63
RNF4-216ENST00000511859 ATXN8OSP0DMR3 200 aa11.14□□□□□ -0.63
RNF4-216ENST00000511859 MYBL2P10244 700 aa11.14□□□□□ -0.63
RNF4-216ENST00000511859 MSH3P20585 1137 aa11.14□□□□□ -0.63
RNF4-216ENST00000511859 ALAS2P22557 587 aa11.14□□□□□ -0.63
RNF4-216ENST00000511859 GABRA4P48169 554 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms