RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 SERPINI1Q99574 410 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 RIOK2Q9BVS4 552 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 FRMD8Q9BZ67 464 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 PRRG3Q9BZD7 231 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 TRIM8Q9BZR9 551 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 FOXP3Q9BZS1 431 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 THAP10Q9P2Z0 257 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 PNMA8BQ9ULN7 279 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 SORCS3Q9UPU3 1222 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 RUVBL2Q9Y230 463 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 SLC27A6Q9Y2P4 619 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 LAMA1P25391 3075 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 KRBA1A5PL33 1030 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 ANHXE9PGG2 379 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 CD3EAPO15446 510 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 PRPF4O43172 522 aaKnown RBP eCLIP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 TIMM44O43615 452 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 SRPRAP08240 638 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 TIMP2P16035 220 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 LHCGRP22888 699 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 SERPINB1P30740 379 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 CLK3P49761 638 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 SLC13A2Q13183 592 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 SGCGQ13326 291 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 BOP1Q14137 746 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 AARS2Q5JTZ9 985 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 SPANXN3Q5MJ09 141 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 N4BP2L1Q5TBK1 243 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 SEL1L3Q68CR1 1132 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 CRTC3Q6UUV7 619 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 TMEM92Q6UXU6 159 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 HSD11B1LQ7Z5J1 315 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 ACVR1CQ8NER5 493 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 TSTD1Q8NFU3 115 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 CALML6Q8TD86 181 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 AP2M1Q96CW1 435 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 APOPT1Q96IL0 206 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 ACSS3Q9H6R3 686 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 TBC1D17Q9HA65 648 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 LGALS13Q9UHV8 139 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 FAM32AQ9Y421 112 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 LDB2O43679 373 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 GUCY1B2O75343 617 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 ATE1O95260 518 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 MLNP12872 115 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 MAOBP27338 520 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 SLC1A6P48664 564 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 RAP1GDS1P52306 607 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 CLCQ05315 142 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 SMU1Q2TAY7 513 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 ZNF284Q2VY69 593 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 PRAMEF14Q5SWL7 426 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 RBM20Q5T481 1227 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 DCDC5Q6ZRR9 648 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 METTL3Q86U44 580 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 PIM3Q86V86 326 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 ADHFE1Q8IWW8 467 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 PIANPQ8IYJ0 282 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 RGL4Q8IZJ4 473 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 TTC30BQ8N4P2 665 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 TSNARE1Q96NA8 513 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 BOCQ9BWV1 1114 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 C8orf33Q9H7E9 229 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 EGFL7Q9UHF1 273 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 TLK1Q9UKI8 766 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 HCN2Q9UL51 889 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 CARD8Q9Y2G2 431 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 CACNA1HO95180 2353 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 GLYATL1P3A0A0U1RQE8 302 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 LOC285095A0A1B0GVY8 99 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 NCF1BA6NI72 391 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 NCF1CA8MVU1 366 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 H0Y858 1186 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 PLOD2O00469 737 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 B4GAT1O43505 415 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 RPP40O75818 363 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 RHOBTB1O94844 696 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 SLC25A14O95258 325 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 GNAO1P09471 354 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 CYP2A6P11509 494 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 ADRB3P13945 408 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 NCF1P14598 390 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 HNRNPLP14866 589 aaKnown RBP eCLIP8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 POU3F3P20264 500 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 ITGALP20701 1170 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 GPR1P46091 355 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 CCR10P46092 362 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 ZP2Q05996 745 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 PIGFQ07326 219 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 GRM3Q14832 879 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 LPAL2Q16609 132 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 IL23RQ5VWK5 629 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 FAM46CQ5VWP2 391 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 ZNF776Q68DI1 518 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 MRNIPQ6NTE8 343 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 BNC2Q6ZN30 1099 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 ERN2Q76MJ5 926 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 SLC26A11Q86WA9 606 aa8.52□□□□□ -1.05
LIMCH1-209ENST00000509277 BEND7Q8N7W2 519 aaPredicted RBP8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms