RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 KAZNQ674X7 775 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 TMEM71Q6P5X7 295 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 TMEM154Q6P9G4 183 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 WDR74Q6RFH5 385 aaPredicted RBP7.89□□□□□ -1.15
SCN1A-207ENST00000507401 KDELC1Q6UW63 502 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 SYDE1Q6ZW31 735 aaPredicted RBP7.89□□□□□ -1.15
SCN1A-207ENST00000507401 USP53Q70EK8 1073 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 MARK2Q7KZI7 788 aaKnown RBP7.89□□□□□ -1.15
SCN1A-207ENST00000507401 CHST15Q7LFX5 561 aaPredicted RBP7.89□□□□□ -1.15
SCN1A-207ENST00000507401 KDELC2Q7Z4H8 507 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 DAAM2Q86T65 1068 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 ZC3H18Q86VM9 953 aaKnown RBP7.89□□□□□ -1.15
SCN1A-207ENST00000507401 ZNF567Q8N184 647 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 BRSK1Q8TDC3 778 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 CKAP2Q8WWK9 683 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 GLYATL1Q969I3 302 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 CRELD1Q96HD1 420 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 MAGEB18Q96M61 343 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 BBC3Q96PG8 261 aaPredicted RBP7.89□□□□□ -1.15
SCN1A-207ENST00000507401 SLC38A3Q99624 504 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 ELAC2Q9BQ52 826 aaKnown RBP7.89□□□□□ -1.15
SCN1A-207ENST00000507401 C19orf43Q9BQ61 176 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 CCDC77Q9BR77 488 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 HERPUD2Q9BSE4 406 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 SPATA16Q9BXB7 569 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.89□□□□□ -1.15
SCN1A-207ENST00000507401 PHACTR1Q9C0D0 580 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 SEMA6CQ9H3T2 930 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 STN1Q9H668 368 aaKnown RBP7.89□□□□□ -1.15
SCN1A-207ENST00000507401 KCNK4Q9NYG8 393 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 SHOC2Q9UQ13 582 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 ZNF148Q9UQR1 794 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 ZNF711Q9Y462 761 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 LOXL2Q9Y4K0 774 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 PCDHGA3Q9Y5H0 932 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 OAS3Q9Y6K5 1087 aaKnown RBP7.89□□□□□ -1.15
SCN1A-207ENST00000507401 USH1CQ9Y6N9 552 aa7.89□□□□□ -1.15
SCN1A-207ENST00000507401 ZFC3H1O60293 1989 aaKnown RBP7.89□□□□□ -1.15
SCN1A-207ENST00000507401 SCN8AQ9UQD0 1980 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 IGHV5-10-1A0A0J9YXX1 117 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 PMS2P1A4D2B8 440 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 A6NCN8 305 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 EIF4E1BA6NMX2 242 aaKnown RBP7.88□□□□□ -1.15
SCN1A-207ENST00000507401 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-207ENST00000507401 K7ENP7 123 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 RASGRF2O14827 1237 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 KMOO15229 486 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 SKAP2O75563 359 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-207ENST00000507401 ANXA9O76027 345 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 TJP3O95049 919 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 KRT16P08779 473 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 PIRTP0C851 137 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 ZNF8P17098 575 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-207ENST00000507401 BPIP17213 487 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 NFKB1P19838 968 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 CTNNA2P26232 953 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 EPHA4P54764 986 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 C16orf72Q14CZ0 275 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 SLC1A5Q15758 541 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 ADRM1Q16186 407 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 SPRED3Q2MJR0 410 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 HSP90AA5PQ58FG0 334 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 SIRPB2Q5JXA9 342 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 PHF19Q5T6S3 580 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 DUPD1Q68J44 220 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 ITPRIPL1Q6GPH6 555 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 OR52E8Q6IFG1 317 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 KLC3Q6P597 504 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 INO80CQ6PI98 192 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-207ENST00000507401 ABRAXAS1Q6UWZ7 409 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 WASH2PQ6VEQ5 465 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 CCDC81Q6ZN84 652 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 TMPRSS9Q7Z410 1059 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 ADGRG6Q86SQ4 1221 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 SLC9B2Q86UD5 537 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 PHYKPLQ8IUZ5 450 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 LRRC57Q8N9N7 239 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 AGBL5Q8NDL9 886 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 OR10G6Q8NH81 332 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 SLC37A2Q8TED4 501 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 PATE1Q8WXA2 126 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 KRT35Q92764 455 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 FAM136AQ96C01 138 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 PPP1R2P1Q96PQ5 205 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 QKIQ96PU8 341 aaKnown RBP eCLIP7.88□□□□□ -1.153e-6■■■■■ 33.4
SCN1A-207ENST00000507401 TAAR9Q96RI9 348 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 CCNL2Q96S94 520 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-207ENST00000507401 TIMM29Q9BSF4 260 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 ASPSCR1Q9BZE9 553 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 OSBPL8Q9BZF1 889 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 OR2AG1Q9H205 316 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 GOLPH3Q9H4A6 298 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 UCK1Q9HA47 277 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 RDH14Q9HBH5 336 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 IL26Q9NPH9 171 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 WASH6PQ9NQA3 447 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 TBCCD1Q9NVR7 557 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 NKIRAS1Q9NYS0 192 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 UBP1Q9NZI7 540 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 IL17CQ9P0M4 197 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms