RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 MASP2O00187 686 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 IFRD1O00458 451 aaPredicted RBP12.25□□□□□ -0.45
SKA1-205ENST00000494518 ZNF749O43361 778 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 KRT86O43790 486 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 CRTAMO95727 393 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 RAB40ALP0C0E4 278 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 CTNNA2P26232 953 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 VAV2P52735 878 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 PRPSAP1Q14558 356 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 SLC9A5Q14940 896 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 BRD3Q15059 726 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 NCF4Q15080 339 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 C1orf189Q5VU69 101 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 SLC6A19Q695T7 634 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 C11orf63Q6NUN7 778 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 CDHR3Q6ZTQ4 885 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 TAS2R42Q7RTR8 314 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 SNX20Q7Z614 316 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 SERPINA9Q86WD7 417 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 CDKL3Q8IVW4 592 aaPredicted RBP12.25□□□□□ -0.45
SKA1-205ENST00000494518 TMEM151BQ8IW70 566 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 TAB3Q8N5C8 712 aaPredicted RBP12.25□□□□□ -0.45
SKA1-205ENST00000494518 CLDN19Q8N6F1 224 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 RBMXL3Q8N7X1 1067 aaKnown RBP12.25□□□□□ -0.45
SKA1-205ENST00000494518 LRFN5Q96NI6 719 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 TRAPPC9Q96Q05 1148 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 SLAMF7Q9NQ25 335 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 PIH1D1Q9NWS0 290 aaKnown RBP12.25□□□□□ -0.45
SKA1-205ENST00000494518 ZDHHC3Q9NYG2 299 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 GPR83Q9NYM4 423 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 ACTR10Q9NZ32 417 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.25□□□□□ -0.45
SKA1-205ENST00000494518 PCDHA13Q9Y5I0 950 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 PCM1Q15154 2024 aa12.25□□□□□ -0.45
SKA1-205ENST00000494518 KLHL33A6NCF5 533 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 TCP11X1B4DZS4 312 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 C9J4A7 227 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 E7EQ34 232 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 MATN2O00339 956 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 PJA2O43164 708 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 HCRTR1O43613 425 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 LDB2O43679 373 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 DPM1O60762 260 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 CEACAM4O75871 244 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 CTSBP07858 339 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 CBSLP0DN79 551 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 RBP3P10745 1247 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 PYGMP11217 842 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 TPH1P17752 444 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 CBSP35520 551 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 HADHBP55084 474 aaKnown RBP12.24□□□□□ -0.45
SKA1-205ENST00000494518 TBX2Q13207 712 aaPredicted RBP12.24□□□□□ -0.45
SKA1-205ENST00000494518 MSLNQ13421 630 aaPredicted RBP12.24□□□□□ -0.45
SKA1-205ENST00000494518 MLIPQ5VWP3 458 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 PAPD7Q5XG87 772 aaKnown RBP12.24□□□□□ -0.45
SKA1-205ENST00000494518 DENND5AQ6IQ26 1287 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 NAPRTQ6XQN6 538 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 AMIGO1Q86WK6 493 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 ADGRF3Q8IZF5 1079 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 CARFQ8N187 725 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 SSC4DQ8WTU2 575 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 N4BP2L2Q92802 583 aaPredicted RBP12.24□□□□□ -0.45
SKA1-205ENST00000494518 C19orf60Q96EN9 201 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 SPATA13Q96N96 652 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 FERMT1Q9BQL6 677 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 PITPNM3Q9BZ71 974 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 OSBPL8Q9BZF1 889 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 FAM60AQ9NP50 221 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 SERTAD3Q9UJW9 196 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 PLAGL1Q9UM63 463 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 G3BP2Q9UN86 482 aaKnown RBP12.24□□□□□ -0.45
SKA1-205ENST00000494518 ICKQ9UPZ9 632 aa12.24□□□□□ -0.45
SKA1-205ENST00000494518 AAR2Q9Y312 384 aaKnown RBP12.24□□□□□ -0.45
SKA1-205ENST00000494518 AGAP14A8MT82 685 aa12.23□□□□□ -0.45
SKA1-205ENST00000494518 C2orf74A8MZ97 194 aa12.23□□□□□ -0.45
SKA1-205ENST00000494518 MAP3K7O43318 606 aa12.23□□□□□ -0.45
SKA1-205ENST00000494518 STK10O94804 968 aaKnown RBP12.23□□□□□ -0.45
SKA1-205ENST00000494518 ACRV1P26436 265 aa12.23□□□□□ -0.45
SKA1-205ENST00000494518 CTNNA1P35221 906 aaKnown RBP12.23□□□□□ -0.45
SKA1-205ENST00000494518 HADHAP40939 763 aa12.23□□□□□ -0.45
SKA1-205ENST00000494518 BOP1Q14137 746 aaKnown RBP12.23□□□□□ -0.45
SKA1-205ENST00000494518 ZIC1Q15915 447 aa12.23□□□□□ -0.45
SKA1-205ENST00000494518 ZNF658BQ4V348 819 aaPredicted RBP12.23□□□□□ -0.45
SKA1-205ENST00000494518 SARM1Q6SZW1 724 aa12.23□□□□□ -0.45
SKA1-205ENST00000494518 SPESP1Q6UW49 350 aa12.23□□□□□ -0.45
SKA1-205ENST00000494518 HOOK3Q86VS8 718 aa12.23□□□□□ -0.45
SKA1-205ENST00000494518 PIANPQ8IYJ0 282 aa12.23□□□□□ -0.45
SKA1-205ENST00000494518 TC2NQ8N9U0 490 aa12.23□□□□□ -0.45
SKA1-205ENST00000494518 OR5AR1Q8NGP9 310 aa12.23□□□□□ -0.45
SKA1-205ENST00000494518 PRR7Q8TB68 274 aa12.23□□□□□ -0.45
SKA1-205ENST00000494518 TFGQ92734 400 aaPredicted RBP12.23□□□□□ -0.45
SKA1-205ENST00000494518 SGSM3Q96HU1 749 aa12.23□□□□□ -0.45
SKA1-205ENST00000494518 SPRTNQ9H040 489 aaPredicted RBP12.23□□□□□ -0.45
SKA1-205ENST00000494518 TSPY26PQ9H489 355 aa12.23□□□□□ -0.45
SKA1-205ENST00000494518 MVB12BQ9H7P6 319 aa12.23□□□□□ -0.45
SKA1-205ENST00000494518 IRAK4Q9NWZ3 460 aa12.23□□□□□ -0.45
SKA1-205ENST00000494518 SMARCAL1Q9NZC9 954 aa12.23□□□□□ -0.45
SKA1-205ENST00000494518 TDRKHQ9Y2W6 561 aaKnown RBP12.23□□□□□ -0.45
SKA1-205ENST00000494518 PRSS21Q9Y6M0 314 aa12.23□□□□□ -0.45
SKA1-205ENST00000494518 CELSR2Q9HCU4 2923 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms