RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 LHPPQ9H008 270 aa13.75□□□□□ -0.21
PRPF40A-211ENST00000493468 GLOD4Q9HC38 313 aa13.75□□□□□ -0.21
PRPF40A-211ENST00000493468 NAV3Q8IVL0 2385 aa13.75□□□□□ -0.21
PRPF40A-211ENST00000493468 LOC285095A0A1B0GVY8 99 aa13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 EPOP01588 193 aa13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 AP1B1Q10567 949 aa13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.74□□□□□ -0.216e-16■□□□□ 10.1
PRPF40A-211ENST00000493468 VWA2Q5GFL6 755 aa13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 TLDC1Q6P9B6 456 aa13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 SARM1Q6SZW1 724 aa13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 SPESP1Q6UW49 350 aa13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 MRGPRGQ86SM5 289 aa13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 ADGRF3Q8IZF5 1079 aa13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 ZNF295-AS1Q8N0V1 137 aa13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 NR4A3Q92570 626 aa13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 OLFM3Q96PB7 478 aa13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 RNF157Q96PX1 679 aa13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 HSD3B7Q9H2F3 369 aa13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 WDR54Q9H977 334 aa13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 MRM3Q9HC36 420 aaKnown RBP13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 FAM60AQ9NP50 221 aa13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 TXLNGQ9NUQ3 528 aa13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 ACTR10Q9NZ32 417 aa13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 DHCR7Q9UBM7 475 aaKnown RBP13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 PKP3Q9Y446 797 aa13.74□□□□□ -0.21
PRPF40A-211ENST00000493468 A0A0A6YYK5 440 aaPredicted RBP13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 C17orf113A0A1B0GUU1 675 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 SOCS6O14544 535 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 PPP1R12AO14974 1030 aaPredicted RBP13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 SGTAO43765 313 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 PMPCBO75439 489 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 ONECUT2O95948 504 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 ALBP02768 609 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 GJC1P36383 396 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 CD151P48509 253 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 PRLHRP49683 370 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 KCNK10P57789 538 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 MFAP5Q13361 173 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 PDK1Q15118 436 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 PRKD1Q15139 912 aaPredicted RBP13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 SLC9A4Q6AI14 798 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 ISLR2Q6UXK2 745 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 DET1Q7L5Y6 550 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 GLT6D1Q7Z4J2 308 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 DAAM2Q86T65 1068 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 AMIGO1Q86WK6 493 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 VSIG1Q86XK7 387 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 OR52E1Q8NGJ3 308 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 LMF1Q96S06 567 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 SPRTNQ9H040 489 aaPredicted RBP13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 KLHL25Q9H0H3 589 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 MVB12BQ9H7P6 319 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 SLC22A11Q9NSA0 550 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 HS3ST3B1Q9Y662 390 aa13.73□□□□□ -0.21
PRPF40A-211ENST00000493468 CPAMD8Q8IZJ3 1885 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 CCDC78A2IDD5 438 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 KCNN4O15554 427 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 PROSCO94903 275 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 PRAMEF1O95521 474 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 POLBP06746 335 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 SNRPB2P08579 225 aaKnown RBP13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 AGAP20933 346 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 CA7P43166 264 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 GCGRP47871 477 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 FOXL2P58012 376 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 SLC9A5Q14940 896 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 NOMO1Q15155 1222 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 SLC5A12Q1EHB4 618 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 TUBB8Q3ZCM7 444 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 TEX44Q53QW1 395 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 SIRPB2Q5JXA9 342 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 XKRXQ6PP77 449 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 KDELC1Q6UW63 502 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 RBM43Q6ZSC3 357 aaKnown RBP13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 HOOK3Q86VS8 718 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 TMEM151BQ8IW70 566 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 CFAP206Q8IYR0 622 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 LILRA3Q8N6C8 439 aaPredicted RBP13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 ZNF398Q8TD17 642 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 RBM41Q96IZ5 413 aaKnown RBP13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 VPS50Q96JG6 964 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 TEKT5Q96M29 485 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 FERD3LQ96RJ6 166 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 NDC1Q9BTX1 674 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 SLC26A1Q9H2B4 701 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 OR52A5Q9H2C5 316 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 FAM8A1Q9UBU6 413 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 FAM153AQ9UHL3 310 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 CDC23Q9UJX2 597 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 HEY1Q9Y5J3 304 aa13.72□□□□□ -0.21
PRPF40A-211ENST00000493468 IFRD1O00458 451 aaPredicted RBP13.71□□□□□ -0.21
PRPF40A-211ENST00000493468 HCRTR1O43613 425 aa13.71□□□□□ -0.21
PRPF40A-211ENST00000493468 ALOX12BO75342 701 aa13.71□□□□□ -0.21
PRPF40A-211ENST00000493468 SKILP12757 684 aa13.71□□□□□ -0.21
PRPF40A-211ENST00000493468 KDELR1P24390 212 aa13.71□□□□□ -0.21
PRPF40A-211ENST00000493468 TNNT3P45378 269 aaPredicted RBP13.71□□□□□ -0.21
PRPF40A-211ENST00000493468 WNT3AP56704 352 aa13.71□□□□□ -0.21
PRPF40A-211ENST00000493468 TAS2R40P59535 323 aa13.71□□□□□ -0.21
PRPF40A-211ENST00000493468 BOP1Q14137 746 aaKnown RBP13.71□□□□□ -0.21
PRPF40A-211ENST00000493468 ZIC1Q15915 447 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms