RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 POMT2Q9UKY4 750 aa17.6■□□□□ 0.41
COL9A3-214ENST00000490398 ASF1AQ9Y294 204 aa17.6■□□□□ 0.41
COL9A3-214ENST00000490398 TMEM184BQ9Y519 407 aaPredicted RBP17.6■□□□□ 0.41
COL9A3-214ENST00000490398 PCDHB11Q9Y5F2 797 aa17.6■□□□□ 0.41
COL9A3-214ENST00000490398 SAR1BQ9Y6B6 198 aa17.6■□□□□ 0.41
COL9A3-214ENST00000490398 LOC101059948A0A1B0GTJ6 334 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 FAM237BA0A1B0GVD1 139 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 UBA6A0AVT1 1052 aaPredicted RBP17.59■□□□□ 0.41
COL9A3-214ENST00000490398 GSAPA4D1B5 854 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 TLCD2A6NGC4 264 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 SLC9B1P1A6NJY1 282 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 DNALI1O14645 258 aaPredicted RBP17.59■□□□□ 0.41
COL9A3-214ENST00000490398 NIPSNAP2O75323 286 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 FGF5P12034 268 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 LIFP15018 202 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 PVRP15151 417 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 RPS3P23396 243 aaKnown RBP eCLIP17.59■□□□□ 0.418e-23■□□□□ 10.5
COL9A3-214ENST00000490398 PRDX3P30048 256 aaKnown RBP17.59■□□□□ 0.41
COL9A3-214ENST00000490398 EIF3BP55884 814 aaKnown RBP17.59■□□□□ 0.41
COL9A3-214ENST00000490398 MRPS25P82663 173 aaKnown RBP17.59■□□□□ 0.41
COL9A3-214ENST00000490398 ABRQ12979 859 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 DHX34Q14147 1143 aaKnown RBP17.59■□□□□ 0.41
COL9A3-214ENST00000490398 GRB7Q14451 532 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 MSS51Q4VC12 460 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 PTRHD1Q6GMV3 140 aaKnown RBP17.59■□□□□ 0.41
COL9A3-214ENST00000490398 ZNF449Q6P9G9 518 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 TMEM135Q86UB9 458 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 TRIM73Q86UV7 250 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 AMIGO1Q86WK6 493 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 PPIL6Q8IXY8 311 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 SLC22A15Q8IZD6 547 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 SLCO2A1Q92959 643 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 TEFMQ96QE5 360 aaKnown RBP17.59■□□□□ 0.41
COL9A3-214ENST00000490398 SPHK1Q9NYA1 384 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 ASIC3Q9UHC3 531 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 RUVBL2Q9Y230 463 aaKnown RBP17.59■□□□□ 0.41
COL9A3-214ENST00000490398 CRYL1Q9Y2S2 319 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 TDRKHQ9Y2W6 561 aaKnown RBP17.59■□□□□ 0.41
COL9A3-214ENST00000490398 PCDHGA4Q9Y5G9 962 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 RPS6KL1Q9Y6S9 549 aa17.59■□□□□ 0.41
COL9A3-214ENST00000490398 KRT87PA6NCN2 255 aa17.58■□□□□ 0.4
COL9A3-214ENST00000490398 PPARGP37231 505 aaPredicted RBP17.58■□□□□ 0.4
COL9A3-214ENST00000490398 GPR19Q15760 415 aa17.58■□□□□ 0.4
COL9A3-214ENST00000490398 IZUMO3Q5VZ72 239 aa17.58■□□□□ 0.4
COL9A3-214ENST00000490398 NEPROQ6NW34 567 aa17.58■□□□□ 0.4
COL9A3-214ENST00000490398 UNC5AQ6ZN44 842 aa17.58■□□□□ 0.4
COL9A3-214ENST00000490398 IGDCC3Q8IVU1 814 aa17.58■□□□□ 0.4
COL9A3-214ENST00000490398 DENND6AQ8IWF6 608 aa17.58■□□□□ 0.4
COL9A3-214ENST00000490398 D2HGDHQ8N465 521 aa17.58■□□□□ 0.4
COL9A3-214ENST00000490398 SIDT2Q8NBJ9 832 aaKnown RBP17.58■□□□□ 0.4
COL9A3-214ENST00000490398 CFAP61Q8NHU2 1237 aa17.58■□□□□ 0.4
COL9A3-214ENST00000490398 FLVCR1-AS1Q8TAF5 88 aa17.58■□□□□ 0.4
COL9A3-214ENST00000490398 TTC9Q92623 222 aa17.58■□□□□ 0.4
COL9A3-214ENST00000490398 CD180Q99467 661 aa17.58■□□□□ 0.4
COL9A3-214ENST00000490398 ZPBPQ9BS86 351 aa17.58■□□□□ 0.4
COL9A3-214ENST00000490398 TRIM51Q9BSJ1 452 aa17.58■□□□□ 0.4
COL9A3-214ENST00000490398 TRIT1Q9H3H1 467 aaKnown RBP17.58■□□□□ 0.4
COL9A3-214ENST00000490398 TSR3Q9UJK0 312 aaKnown RBP17.58■□□□□ 0.4
COL9A3-214ENST00000490398 NFS1Q9Y697 457 aa17.58■□□□□ 0.4
COL9A3-214ENST00000490398 MAD1L1Q9Y6D9 718 aa17.58■□□□□ 0.4
COL9A3-214ENST00000490398 CTAGE9A4FU28 777 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 SPAG6O75602 509 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 KIAA0754O94854 1291 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 PRB1P04280 392 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 ST6GAL1P15907 406 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 F8A1P23610 371 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 PEBP1P30086 187 aaKnown RBP17.57■□□□□ 0.4
COL9A3-214ENST00000490398 DHX9Q08211 1270 aaKnown RBP17.57■□□□□ 0.4
COL9A3-214ENST00000490398 CTBP1Q13363 440 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 TUBB3Q13509 450 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 CCSMST1Q4G0I0 132 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 MRNIPQ6NTE8 343 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 PWWP2BQ6NUJ5 590 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 ARMC6Q6NXE6 501 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 CILP2Q8IUL8 1156 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 FAM20CQ8IXL6 584 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 TBC1D21Q8IYX1 336 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 NLGN4XQ8N0W4 816 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 IL22RA1Q8N6P7 574 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 GALNT6Q8NCL4 622 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 NLGN4YQ8NFZ3 816 aaPredicted RBP17.57■□□□□ 0.4
COL9A3-214ENST00000490398 OR5K2Q8NHB8 316 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 IL17FQ96PD4 163 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 UBL7Q96S82 380 aaPredicted RBP17.57■□□□□ 0.4
COL9A3-214ENST00000490398 MENTQ9BUN1 341 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 AKIRIN1Q9H9L7 192 aaPredicted RBP17.57■□□□□ 0.4
COL9A3-214ENST00000490398 PLAC1Q9HBJ0 212 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 FBXO6Q9NRD1 293 aaPredicted RBP17.57■□□□□ 0.4
COL9A3-214ENST00000490398 ACTR10Q9NZ32 417 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 SAMD15Q9P1V8 674 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 GNPTGQ9UJJ9 305 aa17.57■□□□□ 0.4
COL9A3-214ENST00000490398 CFAP46Q8IYW2 2715 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 ATRXP46100 2492 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 TP73O15350 636 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 TTI1O43156 1089 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 SLCO2B1O94956 709 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 S1PR4O95977 384 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 OGNP20774 298 aaKnown RBP17.56■□□□□ 0.4
COL9A3-214ENST00000490398 CDH3P22223 829 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 HSD11B2P80365 405 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms