RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 CKMT2P17540 419 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 XRCC1P18887 633 aaPredicted RBP10.05□□□□□ -0.8
SKA1-204ENST00000488454 TYK2P29597 1187 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 ATP5DP30049 168 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 MAPK9P45984 424 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 PPM1FP49593 454 aaPredicted RBP10.05□□□□□ -0.8
SKA1-204ENST00000488454 SERPINB8P50452 374 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 MAZP56270 477 aaKnown RBP10.05□□□□□ -0.8
SKA1-204ENST00000488454 RAB10P61026 200 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 HHEXQ03014 270 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 DNAJC3Q13217 504 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 ZNF658BQ4V348 819 aaPredicted RBP10.05□□□□□ -0.8
SKA1-204ENST00000488454 NEK10Q6ZWH5 1172 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 CCDC91Q7Z6B0 441 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 PDZD3Q86UT5 571 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 PIM3Q86V86 326 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 RBM12BQ8IXT5 1001 aaKnown RBP10.05□□□□□ -0.8
SKA1-204ENST00000488454 SLC35F3Q8IY50 421 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 CPNE9Q8IYJ1 553 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 MYO1HQ8N1T3 1032 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 SFRP1Q8N474 314 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 KYQ8NBH2 561 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 GPR156Q8NFN8 814 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 CD200R1Q8TD46 325 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 MAGEC3Q8TD91 643 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 SLC37A2Q8TED4 501 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 DCAKDQ8WVC6 231 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 ZFPM2Q8WW38 1151 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 NAT6Q93015 286 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 LINGO1Q96FE5 620 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 CAMK1GQ96NX5 476 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 INSM2Q96T92 566 aaPredicted RBP10.05□□□□□ -0.8
SKA1-204ENST00000488454 SLC38A3Q99624 504 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 SLC30A3Q99726 388 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 OLFM1Q99784 485 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 MCMBPQ9BTE3 642 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.05□□□□□ -0.8
SKA1-204ENST00000488454 ROPN1BQ9BZX4 212 aaPredicted RBP10.05□□□□□ -0.8
SKA1-204ENST00000488454 OR52A5Q9H2C5 316 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 TRIT1Q9H3H1 467 aaKnown RBP10.05□□□□□ -0.8
SKA1-204ENST00000488454 CAB39LQ9H9S4 337 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 ROPN1Q9HAT0 212 aaPredicted RBP10.05□□□□□ -0.8
SKA1-204ENST00000488454 POPDC3Q9HBV1 291 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 POT1Q9NUX5 634 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 SCHIP1Q9P0W5 487 aaPredicted RBP10.05□□□□□ -0.8
SKA1-204ENST00000488454 LRIT1Q9P2V4 623 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 PSMC3IPQ9P2W1 217 aaPredicted RBP10.05□□□□□ -0.8
SKA1-204ENST00000488454 POLG2Q9UHN1 485 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 PLAAQ9Y263 795 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 MED16Q9Y2X0 877 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 CFAP20Q9Y6A4 193 aaKnown RBP10.05□□□□□ -0.8
SKA1-204ENST00000488454 RALGAPA1Q6GYQ0 2036 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 PCDH15Q96QU1 1955 aa10.05□□□□□ -0.8
SKA1-204ENST00000488454 SLC30A4O14863 429 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 TNFSF14O43557 240 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 NUDT21O43809 227 aaKnown RBP10.04□□□□□ -0.8
SKA1-204ENST00000488454 ZBTB14O43829 449 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 CDH16O75309 829 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 TCEA3O75764 348 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 MPC1LP0DKB6 136 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 CKMT1AP12532 417 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 BMP2P12643 396 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 MAP4P27816 1152 aaKnown RBP10.04□□□□□ -0.8
SKA1-204ENST00000488454 SLCO1A2P46721 670 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 BMPR2Q13873 1038 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 TRIP6Q15654 476 aaKnown RBP10.04□□□□□ -0.8
SKA1-204ENST00000488454 TAF1BQ53T94 588 aaPredicted RBP10.04□□□□□ -0.8
SKA1-204ENST00000488454 BEND6Q5SZJ8 279 aaPredicted RBP10.04□□□□□ -0.8
SKA1-204ENST00000488454 UNC5DQ6UXZ4 953 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 CROCCP2Q86T23 111 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 TBC1D1Q86TI0 1168 aaPredicted RBP10.04□□□□□ -0.8
SKA1-204ENST00000488454 TDRPQ86YL5 185 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 VRK3Q8IV63 474 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 CEP97Q8IW35 865 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 TBC1D21Q8IYX1 336 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 RAB42Q8N4Z0 105 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 PHC3Q8NDX5 983 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 ACVR1CQ8NER5 493 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 EEF1AKMT1Q8WVE0 214 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 PATE1Q8WXA2 126 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 RMDN2Q96LZ7 410 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 TSNARE1Q96NA8 513 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 DHRS4Q9BTZ2 278 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 ABCG4Q9H172 646 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 MVB12BQ9H7P6 319 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 ZNF624Q9P2J8 865 aaPredicted RBP10.04□□□□□ -0.8
SKA1-204ENST00000488454 TBK1Q9UHD2 729 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 CDYLQ9Y232 598 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 ACOT9Q9Y305 439 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 EP300Q09472 2414 aaPredicted RBP10.04□□□□□ -0.8
SKA1-204ENST00000488454 BPTFQ12830 3046 aa10.04□□□□□ -0.8
SKA1-204ENST00000488454 A0A087X1B8 175 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 UQCRHLA0A096LP55 91 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 EME2A4GXA9 379 aaPredicted RBP10.03□□□□□ -0.8
SKA1-204ENST00000488454 TRIM49D1C9J1S8 452 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 PHGDHO43175 533 aaKnown RBP10.03□□□□□ -0.8
SKA1-204ENST00000488454 LILRA1O75019 489 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 CBFA2T3O75081 653 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 MT-ND3P03897 115 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 CATP04040 527 aaKnown RBP10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms