RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	TWNK	Q96RR1	684 aa		4.08	□□□□□ -1.76
SNRNP40-205	ENST00000486941	BRINP2	Q9C0B6	783 aa		4.08	□□□□□ -1.76
SNRNP40-205	ENST00000486941	BLZF1	Q9H2G9	400 aa		4.08	□□□□□ -1.76
SNRNP40-205	ENST00000486941	IL21R	Q9HBE5	538 aa		4.08	□□□□□ -1.76
SNRNP40-205	ENST00000486941	MOV10	Q9HCE1	1003 aa	Known RBP	4.08	□□□□□ -1.76
SNRNP40-205	ENST00000486941	TM7SF3	Q9NS93	570 aa		4.08	□□□□□ -1.76
SNRNP40-205	ENST00000486941	HMGXB4	Q9UGU5	601 aa		4.08	□□□□□ -1.76
SNRNP40-205	ENST00000486941	STEAP1	Q9UHE8	339 aa		4.08	□□□□□ -1.76
SNRNP40-205	ENST00000486941	AGO1	Q9UL18	857 aa	Known RBP	4.08	□□□□□ -1.76
SNRNP40-205	ENST00000486941	PCDHA7	Q9UN72	937 aa		4.08	□□□□□ -1.76
SNRNP40-205	ENST00000486941	COL6A6	A6NMZ7	2263 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	TDRD6	O60522	2096 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	COL5A1	P20908	1838 aa	Predicted RBP	4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	FREM2	Q5SZK8	3169 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	SETX	Q7Z333	2677 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941		A0A1B0GVT2	93 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	TRABD2B	A6NFA1	517 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	ISM1	B1AKI9	464 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941		E9PAM4	449 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	PRY	O14603	147 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	PAPSS1	O43252	624 aa	Predicted RBP	4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	CTIF	O43310	598 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	TNFSF14	O43557	240 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	FRS3	O43559	492 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	CALU	O43852	315 aa	Predicted RBP	4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	DFNA5	O60443	496 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	TSPAN3	O60637	253 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	MYL1	P05976	194 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	CD19	P15391	556 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	ST6GAL1	P15907	406 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	PRKCH	P24723	683 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	GTF2H1	P32780	548 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	PIK3CA	P42336	1068 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	CSNK1E	P49674	416 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	VAMP7	P51809	220 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	INPP5J	Q15735	1006 aa	Predicted RBP	4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	SMAD1	Q15797	465 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	NFIL3	Q16649	462 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	KIF19	Q2TAC6	998 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	PRTG	Q2VWP7	1150 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	MPPE1	Q53F39	396 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	RAB41	Q5JT25	222 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	RESP18	Q5W5W9	173 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	TMEM215	Q68D42	235 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	ARHGAP17	Q68EM7	881 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	PM20D1	Q6GTS8	502 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	SPOPL	Q6IQ16	392 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	RBM44	Q6ZP01	1051 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	INTS8	Q75QN2	995 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	RSRC2	Q7L4I2	434 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	CEP57L1	Q8IYX8	460 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	ANKRD52	Q8NB46	1076 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	KIAA0895	Q8NCT3	520 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	CCDC150	Q8NCX0	1101 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	ENGASE	Q8NFI3	743 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	OR2T3	Q8NH03	318 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	WFIKKN2	Q8TEU8	576 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	DDI1	Q8WTU0	396 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	IGSF8	Q969P0	613 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	JAKMIP2	Q96AA8	810 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	TMA16	Q96EY4	203 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	ZDHHC12	Q96GR4	267 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	PAGE5	Q96GU1	130 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	TMEM245	Q9H330	911 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	C6orf106	Q9H6K1	298 aa	Predicted RBP	4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	APOBEC3G	Q9HC16	384 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	OLA1	Q9NTK5	396 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	EXOC1	Q9NV70	894 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	DNAJB11	Q9UBS4	358 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	SUN2	Q9UH99	717 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	RASAL2	Q9UJF2	1139 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	STOML2	Q9UJZ1	356 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	RCOR1	Q9UKL0	485 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	CLEC4E	Q9ULY5	219 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	PLA2G4C	Q9UP65	541 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	TRAF3IP3	Q9Y228	551 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	LAMA5	O15230	3695 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	WDFY3	Q8IZQ1	3526 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941	PLXNA2	O75051	1894 aa		4.07	□□□□□ -1.76
SNRNP40-205	ENST00000486941		A0A087WV48	116 aa		4.06	□□□□□ -1.76
SNRNP40-205	ENST00000486941		F8W8V4	182 aa		4.06	□□□□□ -1.76
SNRNP40-205	ENST00000486941	VILL	O15195	856 aa		4.06	□□□□□ -1.76
SNRNP40-205	ENST00000486941	SEMA4F	O95754	770 aa		4.06	□□□□□ -1.76
SNRNP40-205	ENST00000486941	ZBED1	O96006	694 aa		4.06	□□□□□ -1.76
SNRNP40-205	ENST00000486941	ATP5B	P06576	529 aa	Known RBP	4.06	□□□□□ -1.76
SNRNP40-205	ENST00000486941	NGFR	P08138	427 aa		4.06	□□□□□ -1.76
SNRNP40-205	ENST00000486941	HMBS	P08397	361 aa		4.06	□□□□□ -1.76
SNRNP40-205	ENST00000486941	KRT13	P13646	458 aa		4.06	□□□□□ -1.76
SNRNP40-205	ENST00000486941	HLA-E	P13747	358 aa		4.06	□□□□□ -1.76
SNRNP40-205	ENST00000486941	TPH1	P17752	444 aa		4.06	□□□□□ -1.76
SNRNP40-205	ENST00000486941	CD58	P19256	250 aa		4.06	□□□□□ -1.76
SNRNP40-205	ENST00000486941	CMA1	P23946	247 aa		4.06	□□□□□ -1.76
SNRNP40-205	ENST00000486941	NR2F2	P24468	414 aa		4.06	□□□□□ -1.76
SNRNP40-205	ENST00000486941	CD27	P26842	260 aa		4.06	□□□□□ -1.76
SNRNP40-205	ENST00000486941	HLA-F	P30511	346 aa		4.06	□□□□□ -1.76
SNRNP40-205	ENST00000486941	ACSL1	P33121	698 aa		4.06	□□□□□ -1.76
SNRNP40-205	ENST00000486941	PSMC2	P35998	433 aa	Known RBP	4.06	□□□□□ -1.76
SNRNP40-205	ENST00000486941	PBX1	P40424	430 aa		4.06	□□□□□ -1.76
SNRNP40-205	ENST00000486941	GRK6	P43250	576 aa		4.06	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms