RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 RANBP9Q96S59 729 aa8.87□□□□□ -0.99
SF3A1-206ENST00000471037 EBNA1BP2Q99848 306 aaKnown RBP8.87□□□□□ -0.99
SF3A1-206ENST00000471037 SPATA16Q9BXB7 569 aa8.87□□□□□ -0.99
SF3A1-206ENST00000471037 TXLNGYQ9BZA5 131 aa8.87□□□□□ -0.99
SF3A1-206ENST00000471037 OSGEPL1Q9H4B0 414 aa8.87□□□□□ -0.99
SF3A1-206ENST00000471037 TRABDQ9H4I3 376 aa8.87□□□□□ -0.99
SF3A1-206ENST00000471037 ZFYVE1Q9HBF4 777 aa8.87□□□□□ -0.99
SF3A1-206ENST00000471037 MRM3Q9HC36 420 aaKnown RBP8.87□□□□□ -0.99
SF3A1-206ENST00000471037 WASH6PQ9NQA3 447 aa8.87□□□□□ -0.99
SF3A1-206ENST00000471037 RAD18Q9NS91 495 aa8.87□□□□□ -0.99
SF3A1-206ENST00000471037 HACD3Q9P035 362 aa8.87□□□□□ -0.99
SF3A1-206ENST00000471037 SAMD15Q9P1V8 674 aa8.87□□□□□ -0.99
SF3A1-206ENST00000471037 SEMA5BQ9P283 1151 aa8.87□□□□□ -0.99
SF3A1-206ENST00000471037 SLC23A2Q9UGH3 650 aa8.87□□□□□ -0.99
SF3A1-206ENST00000471037 LNPEPQ9UIQ6 1025 aa8.87□□□□□ -0.99
SF3A1-206ENST00000471037 TLK1Q9UKI8 766 aa8.87□□□□□ -0.99
SF3A1-206ENST00000471037 TEX264Q9Y6I9 313 aa8.87□□□□□ -0.99
SF3A1-206ENST00000471037 NBPF19A0A087WUL8 3843 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 HEATR9A2RTY3 570 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 CDC14CA4D256 554 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 PDZK1P1A8MUH7 402 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 KMOO15229 486 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 KIF1CO43896 1103 aaKnown RBP8.86□□□□□ -0.99
SF3A1-206ENST00000471037 VEGFDO43915 354 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 RASSF9O75901 435 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 CRTAMO95727 393 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 TTC4O95801 387 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 PDGFAP04085 211 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 GSTA2P09210 222 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 CCNYL3P0C7X3 344 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 BRAFP15056 766 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 ZNF7P17097 686 aaPredicted RBP8.86□□□□□ -0.99
SF3A1-206ENST00000471037 AMD1P17707 334 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 TPH1P17752 444 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 NELFEP18615 380 aaKnown RBP8.86□□□□□ -0.99
SF3A1-206ENST00000471037 PGAM1P18669 254 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 ADRA1DP25100 572 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 ELK3P41970 407 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 PDE1BQ01064 536 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 FASTKD3Q14CZ7 662 aaKnown RBP8.86□□□□□ -0.99
SF3A1-206ENST00000471037 PCID2Q5JVF3 399 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 BEND6Q5SZJ8 279 aaPredicted RBP8.86□□□□□ -0.99
SF3A1-206ENST00000471037 CACHD1Q5VU97 1274 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 CAPRIN2Q6IMN6 1127 aaKnown RBP8.86□□□□□ -0.99
SF3A1-206ENST00000471037 CASC4Q6P4E1 433 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 NLRP9Q7RTR0 991 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 TMEM135Q86UB9 458 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 PPP1R3BQ86XI6 285 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 ZNF547Q8IVP9 402 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 MPP5Q8N3R9 675 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 GALNT11Q8NCW6 608 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 FBXO36Q8NEA4 188 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 BRSK1Q8TDC3 778 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 ANKRD7Q92527 254 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 PEX13Q92968 403 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 ZDHHC12Q96GR4 267 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 SLC41A2Q96JW4 573 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 FCRL4Q96PJ5 515 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 KIFC1Q9BW19 673 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 TWSG1Q9GZX9 223 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 CDC42EP4Q9H3Q1 356 aaKnown RBP8.86□□□□□ -0.99
SF3A1-206ENST00000471037 MAGEE1Q9HCI5 957 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 LRRC4CQ9HCJ2 640 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 SLC40A1Q9NP59 571 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 LHX9Q9NQ69 397 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 PIH1D1Q9NWS0 290 aaKnown RBP8.86□□□□□ -0.99
SF3A1-206ENST00000471037 SYBUQ9NX95 663 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 ZC3H7BQ9UGR2 993 aaKnown RBP8.86□□□□□ -0.99
SF3A1-206ENST00000471037 PADI1Q9ULC6 663 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 SOX13Q9UN79 622 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 CHMP2BQ9UQN3 213 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 TCAF1Q9Y4C2 921 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 MAD1L1Q9Y6D9 718 aa8.86□□□□□ -0.99
SF3A1-206ENST00000471037 SPTAN1Q13813 2472 aaKnown RBP8.86□□□□□ -0.99
SF3A1-206ENST00000471037 FAM237BA0A1B0GVD1 139 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 PIPSLA2A3N6 862 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 OR52A4PA6NMU1 304 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 VPS4BO75351 444 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 KATNA1O75449 491 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 BANF1O75531 89 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 USP1O94782 785 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 TIAF1O95411 115 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 POLBP06746 335 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 ABHD2P08910 425 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 IDSP22304 550 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 PHBP35232 272 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 CRADDP78560 199 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 MSLNQ13421 630 aaPredicted RBP8.85□□□□□ -0.99
SF3A1-206ENST00000471037 GPR18Q14330 331 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 POU6F1Q14863 301 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 TAF1AQ15573 450 aaPredicted RBP8.85□□□□□ -0.99
SF3A1-206ENST00000471037 SEPT7Q16181 437 aaKnown RBP8.85□□□□□ -0.99
SF3A1-206ENST00000471037 UGT8Q16880 541 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 PLA2G4EQ3MJ16 856 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 C4orf17Q53FE4 359 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 SPANXN3Q5MJ09 141 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 ZNF648Q5T619 568 aaPredicted RBP8.85□□□□□ -0.99
SF3A1-206ENST00000471037 ALS2CLQ60I27 953 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 STEAP4Q687X5 459 aa8.85□□□□□ -0.99
SF3A1-206ENST00000471037 CRTC3Q6UUV7 619 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms