RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 OR52E1Q8NGJ3 308 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 DENND1AQ8TEH3 1009 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 TTC1Q99614 292 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 APOL2Q9BQE5 337 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 NUDT9Q9BW91 350 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 AP1M1Q9BXS5 423 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 COG4Q9H9E3 785 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 ARNT2Q9HBZ2 717 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 ACTR10Q9NZ32 417 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 MACROD2A1Z1Q3 448 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 QSOX1O00391 747 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 KCNN4O15554 427 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 LDB2O43679 373 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 SGTAO43765 313 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 AP2A2O94973 939 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 TJP3O95049 919 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 PTMAP06454 111 aaKnown RBP12.87□□□□□ -0.35
HMGB3-204ENST00000448905 CAPN1P07384 714 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 RBP3P10745 1247 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 MC4RP32245 332 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 SHMT2P34897 504 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 FOLR3P41439 243 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 EIF3EP60228 445 aaKnown RBP12.87□□□□□ -0.35
HMGB3-204ENST00000448905 PLOD1Q02809 727 aaPredicted RBP12.87□□□□□ -0.35
HMGB3-204ENST00000448905 ATP1A4Q13733 1029 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 SLC6A19Q695T7 634 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 ZADH2Q8N4Q0 377 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 LILRA3Q8N6C8 439 aaPredicted RBP12.87□□□□□ -0.35
HMGB3-204ENST00000448905 OR13C4Q8NGS5 318 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 NAT14Q8WUY8 206 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 PTERQ96BW5 349 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 TBL1YQ9BQ87 522 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 OR52A5Q9H2C5 316 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 TXLNGQ9NUQ3 528 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 IRAK4Q9NWZ3 460 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 IFT80Q9P2H3 777 aaPredicted RBP12.87□□□□□ -0.35
HMGB3-204ENST00000448905 NDOR1Q9UHB4 597 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 B3GNT3Q9Y2A9 372 aa12.87□□□□□ -0.35
HMGB3-204ENST00000448905 LIN7AO14910 233 aaPredicted RBP12.86□□□□□ -0.35
HMGB3-204ENST00000448905 PSMD3O43242 534 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 ACRV1P26436 265 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 PSMB4P28070 264 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 PDHA2P29803 388 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 NAP1L1P55209 391 aaKnown RBP12.86□□□□□ -0.35
HMGB3-204ENST00000448905 OTUD4Q01804 1114 aaKnown RBP12.86□□□□□ -0.35
HMGB3-204ENST00000448905 BOP1Q14137 746 aaKnown RBP12.86□□□□□ -0.35
HMGB3-204ENST00000448905 SKOR2Q2VWA4 1001 aaPredicted RBP12.86□□□□□ -0.35
HMGB3-204ENST00000448905 PLEKHN1Q494U1 663 aaPredicted RBP12.86□□□□□ -0.35
HMGB3-204ENST00000448905 ZNF789Q5FWF6 425 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 C11orf63Q6NUN7 778 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 TLDC1Q6P9B6 456 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 SPESP1Q6UW49 350 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 CDHR3Q6ZTQ4 885 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 SERPINA9Q86WD7 417 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 CCDC170Q8IYT3 715 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 ADGRF3Q8IZF5 1079 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 RBMXL3Q8N7X1 1067 aaKnown RBP12.86□□□□□ -0.35
HMGB3-204ENST00000448905 ACTL9Q8TC94 416 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 PROKR1Q8TCW9 393 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 NACC2Q96BF6 587 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 NDC1Q9BTX1 674 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 CHRNA10Q9GZZ6 450 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 ILKAPQ9H0C8 392 aaPredicted RBP12.86□□□□□ -0.35
HMGB3-204ENST00000448905 KLHL25Q9H0H3 589 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 XKR8Q9H6D3 395 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 C10orf88Q9H8K7 445 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 ATP13A2Q9NQ11 1180 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 SMARCAL1Q9NZC9 954 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 OR6C2Q9NZP2 312 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 LUZP4Q9P127 313 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 SRPK3Q9UPE1 567 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 ASF1AQ9Y294 204 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 PTRH2Q9Y3E5 179 aaKnown RBP12.86□□□□□ -0.35
HMGB3-204ENST00000448905 PCDHA3Q9Y5H8 950 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 PCDHA13Q9Y5I0 950 aa12.86□□□□□ -0.35
HMGB3-204ENST00000448905 COPG1Q9Y678 874 aaKnown RBP12.86□□□□□ -0.35
HMGB3-204ENST00000448905 TNRC6AQ8NDV7 1962 aaKnown RBP12.86□□□□□ -0.35
HMGB3-204ENST00000448905 IGLV3-16A0A075B6K0 115 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 GOLGA6L9A6NEM1 432 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 KLF7O75840 302 aaPredicted RBP12.85□□□□□ -0.35
HMGB3-204ENST00000448905 IPO7O95373 1038 aaKnown RBP12.85□□□□□ -0.35
HMGB3-204ENST00000448905 GAS8O95995 478 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 FTH1P02794 183 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 PIM1P11309 404 aaPredicted RBP12.85□□□□□ -0.35
HMGB3-204ENST00000448905 PVRP15151 417 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 NSG1P42857 185 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 ZNF140P52738 457 aaPredicted RBP12.85□□□□□ -0.35
HMGB3-204ENST00000448905 RWDD2BP57060 319 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 CACNG1Q06432 222 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 MRPL49Q13405 166 aaKnown RBP12.85□□□□□ -0.35
HMGB3-204ENST00000448905 RAPSNQ13702 412 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 MYBPC3Q14896 1274 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 PARP6Q2NL67 630 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 DCAF10Q5QP82 559 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 FAM69BQ5VUD6 431 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 RHBDD2Q6NTF9 364 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 FAM198BQ6UWH4 519 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 IGFL3Q6UXB1 125 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 UNC5AQ6ZN44 842 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 MAMDC2Q7Z304 686 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms