RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 AGBL3Q8NEM8 1001 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 CFAP61Q8NHU2 1237 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 SH3TC1Q8TE82 1336 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 TRPC4APQ8TEL6 797 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 PALLDQ8WX93 1383 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 MED30Q96HR3 178 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 METTL2AQ96IZ6 378 aaKnown RBP4.08□□□□□ -1.76
VPS29-202ENST00000447578 EGLN2Q96KS0 407 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 CCDC43Q96MW1 224 aaKnown RBP4.08□□□□□ -1.76
VPS29-202ENST00000447578 ZNF830Q96NB3 372 aaPredicted RBP4.08□□□□□ -1.76
VPS29-202ENST00000447578 FERMT1Q9BQL6 677 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 LRRC2Q9BYS8 371 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 NPFFR1Q9GZQ6 430 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 DNAI2Q9GZS0 605 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 PIGMQ9H3S5 423 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 HINT3Q9NQE9 182 aaKnown RBP4.08□□□□□ -1.76
VPS29-202ENST00000447578 PIH1D3Q9NQM4 214 aaKnown RBP4.08□□□□□ -1.76
VPS29-202ENST00000447578 LARSQ9P2J5 1176 aaKnown RBP4.08□□□□□ -1.76
VPS29-202ENST00000447578 DNAJB9Q9UBS3 223 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 OR14J1Q9UGF5 321 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 RCOR1Q9UKL0 485 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 NAP1L2Q9ULW6 460 aaPredicted RBP4.08□□□□□ -1.76
VPS29-202ENST00000447578 PCDHGA5Q9Y5G8 931 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 INSL5Q9Y5Q6 135 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 CLIC4Q9Y696 253 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 MAP3K15Q6ZN16 1313 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 A0A0G2JLW4 131 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 GOLGA6L4A6NEF3 574 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 H3BQV1 296 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 SMAD9O15198 467 aaKnown RBP4.07□□□□□ -1.76
VPS29-202ENST00000447578 RNF113AO15541 343 aaKnown RBP4.07□□□□□ -1.76
VPS29-202ENST00000447578 FMO6PO60774 539 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 PCCAP05165 728 aaPredicted RBP4.07□□□□□ -1.76
VPS29-202ENST00000447578 ICAM1P05362 532 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 PFKFB1P16118 471 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 PRLRP16471 622 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 CD58P19256 250 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 TCEA1P23193 301 aaKnown RBP4.07□□□□□ -1.76
VPS29-202ENST00000447578 GPTP24298 496 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 DNASE1P24855 282 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 CHATP28329 748 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 AVPR1AP37288 418 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 METAP2P50579 478 aaKnown RBP eCLIP4.07□□□□□ -1.76
VPS29-202ENST00000447578 CDH12P55289 794 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 CDH13P55290 713 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 GAD2Q05329 585 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 LTBQ06643 244 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 SCN1BQ07699 218 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 ZNF273Q14593 569 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 SLMAPQ14BN4 828 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 DCAF6Q58WW2 860 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 MPP7Q5T2T1 576 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 GGNBP1Q5YKI7 109 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 TMEM71Q6P5X7 295 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 STOX1Q6ZVD7 989 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 TRILQ7L0X0 811 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 PIWIL3Q7Z3Z3 882 aaKnown RBP4.07□□□□□ -1.76
VPS29-202ENST00000447578 HAUS6Q7Z4H7 955 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 MB21D2Q8IYB1 491 aaPredicted RBP4.07□□□□□ -1.76
VPS29-202ENST00000447578 CCAR2Q8N163 923 aaKnown RBP4.07□□□□□ -1.76
VPS29-202ENST00000447578 SPATA6LQ8N4H0 392 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 KDM1BQ8NB78 822 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 TMEM174Q8WUU8 243 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 PIGBQ92521 554 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 TMEM18Q96B42 140 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 MGME1Q9BQP7 344 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 TEX13AQ9BXU3 409 aaPredicted RBP4.07□□□□□ -1.76
VPS29-202ENST00000447578 MMADHCQ9H3L0 296 aaPredicted RBP4.07□□□□□ -1.76
VPS29-202ENST00000447578 CHMP1AQ9HD42 196 aaPredicted RBP4.07□□□□□ -1.76
VPS29-202ENST00000447578 MKKSQ9NPJ1 570 aaPredicted RBP4.07□□□□□ -1.76
VPS29-202ENST00000447578 DDX43Q9NXZ2 648 aaKnown RBP4.07□□□□□ -1.76
VPS29-202ENST00000447578 UBA2Q9UBT2 640 aaPredicted RBP4.07□□□□□ -1.76
VPS29-202ENST00000447578 WBP11Q9Y2W2 641 aaKnown RBP4.07□□□□□ -1.76
VPS29-202ENST00000447578 STON1Q9Y6Q2 735 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 LAMB4A4D0S4 1761 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 ARFGEF2Q9Y6D5 1785 aa4.07□□□□□ -1.76
VPS29-202ENST00000447578 PARP4Q9UKK3 1724 aaKnown RBP4.07□□□□□ -1.76
VPS29-202ENST00000447578 A0A0U1RQK1 487 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 KANSL1LA0AUZ9 987 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 ZNF320A2RRD8 509 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 OR6C76A6NM76 312 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 E7EWF7 191 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 DNM1LO00429 736 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 PSMD14O00487 310 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 PFKFB2O60825 505 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 NDUFB4O95168 129 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 CLDN7O95471 211 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 GH2P01242 217 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 HSPD1P10809 573 aaKnown RBP4.06□□□□□ -1.76
VPS29-202ENST00000447578 FGF3P11487 239 aaPredicted RBP4.06□□□□□ -1.76
VPS29-202ENST00000447578 VPREB1P12018 145 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 PDGFRAP16234 1089 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 ACHEP22303 614 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 UBA1P22314 1058 aaKnown RBP4.06□□□□□ -1.76
VPS29-202ENST00000447578 MYF6P23409 242 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 DCTDP32321 178 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 HNF4AP41235 474 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 SIRPAP78324 504 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 UBXN1Q04323 297 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 SREBF2Q12772 1141 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms