RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 ZNF449Q6P9G9 518 aa20.12■□□□□ 0.81
SDC1-205ENST00000447124 DRICH1Q6PGQ1 229 aaPredicted RBP20.12■□□□□ 0.81
SDC1-205ENST00000447124 ATG14Q6ZNE5 492 aa20.12■□□□□ 0.81
SDC1-205ENST00000447124 OR4L1Q8NH43 312 aa20.12■□□□□ 0.81
SDC1-205ENST00000447124 TRAPPC9Q96Q05 1148 aa20.12■□□□□ 0.81
SDC1-205ENST00000447124 PITPNM3Q9BZ71 974 aa20.12■□□□□ 0.81
SDC1-205ENST00000447124 SOHLH2Q9NX45 425 aa20.12■□□□□ 0.81
SDC1-205ENST00000447124 ACTR10Q9NZ32 417 aa20.12■□□□□ 0.81
SDC1-205ENST00000447124 ICKQ9UPZ9 632 aa20.12■□□□□ 0.81
SDC1-205ENST00000447124 TCAF1Q9Y4C2 921 aa20.12■□□□□ 0.81
SDC1-205ENST00000447124 CDC14CA4D256 554 aa20.11■□□□□ 0.81
SDC1-205ENST00000447124 C21orf140B9A014 251 aa20.11■□□□□ 0.81
SDC1-205ENST00000447124 MATN2O00339 956 aa20.11■□□□□ 0.81
SDC1-205ENST00000447124 RECKO95980 971 aa20.11■□□□□ 0.81
SDC1-205ENST00000447124 GAS8O95995 478 aa20.11■□□□□ 0.81
SDC1-205ENST00000447124 APRTP07741 180 aa20.11■□□□□ 0.81
SDC1-205ENST00000447124 KCNJ1P48048 391 aa20.11■□□□□ 0.81
SDC1-205ENST00000447124 RPS18P62269 152 aaKnown RBP20.11■□□□□ 0.81
SDC1-205ENST00000447124 ABRQ12979 859 aa20.11■□□□□ 0.81
SDC1-205ENST00000447124 ZNF789Q5FWF6 425 aa20.11■□□□□ 0.81
SDC1-205ENST00000447124 PLEKHS1Q5SXH7 462 aa20.11■□□□□ 0.81
SDC1-205ENST00000447124 AFTPHQ6ULP2 937 aa20.11■□□□□ 0.81
SDC1-205ENST00000447124 ZNF517Q6ZMY9 492 aaPredicted RBP20.11■□□□□ 0.81
SDC1-205ENST00000447124 UNC5AQ6ZN44 842 aa20.11■□□□□ 0.81
SDC1-205ENST00000447124 LDB1Q86U70 411 aaPredicted RBP20.11■□□□□ 0.81
SDC1-205ENST00000447124 TMEM126BQ8IUX1 230 aa20.11■□□□□ 0.81
SDC1-205ENST00000447124 CCDC89Q8N998 374 aa20.11■□□□□ 0.81
SDC1-205ENST00000447124 OR6P1Q8NGX9 317 aa20.11■□□□□ 0.81
SDC1-205ENST00000447124 OR8K5Q8NH50 307 aa20.11■□□□□ 0.81
SDC1-205ENST00000447124 OR1L3Q8NH93 324 aa20.11■□□□□ 0.81
SDC1-205ENST00000447124 CHRAC1Q9NRG0 131 aa20.11■□□□□ 0.81
SDC1-205ENST00000447124 LATS2Q9NRM7 1088 aa20.11■□□□□ 0.81
SDC1-205ENST00000447124 MYO18BQ8IUG5 2567 aa20.1■□□□□ 0.81
SDC1-205ENST00000447124 K7EM74 188 aa20.1■□□□□ 0.81
SDC1-205ENST00000447124 CPNE3O75131 537 aaKnown RBP20.1■□□□□ 0.81
SDC1-205ENST00000447124 FTH1P02794 183 aa20.1■□□□□ 0.81
SDC1-205ENST00000447124 OR56A5P0C7T3 313 aa20.1■□□□□ 0.81
SDC1-205ENST00000447124 CCR7P32248 378 aa20.1■□□□□ 0.81
SDC1-205ENST00000447124 LYPLAL1Q5VWZ2 237 aa20.1■□□□□ 0.81
SDC1-205ENST00000447124 LRRC8AQ8IWT6 810 aa20.1■□□□□ 0.81
SDC1-205ENST00000447124 C9orf43Q8TAL5 461 aaPredicted RBP20.1■□□□□ 0.81
SDC1-205ENST00000447124 LKAAEAR1Q8TD35 194 aa20.1■□□□□ 0.81
SDC1-205ENST00000447124 SGSM3Q96HU1 749 aa20.1■□□□□ 0.81
SDC1-205ENST00000447124 GPR87Q9BY21 358 aa20.1■□□□□ 0.81
SDC1-205ENST00000447124 TWSG1Q9GZX9 223 aa20.1■□□□□ 0.81
SDC1-205ENST00000447124 CHST8Q9H2A9 424 aa20.1■□□□□ 0.81
SDC1-205ENST00000447124 ACTL8Q9H568 366 aa20.1■□□□□ 0.81
SDC1-205ENST00000447124 SPHK1Q9NYA1 384 aa20.1■□□□□ 0.81
SDC1-205ENST00000447124 POLHQ9Y253 713 aa20.1■□□□□ 0.81
SDC1-205ENST00000447124 FARSAQ9Y285 508 aaKnown RBP20.1■□□□□ 0.81
SDC1-205ENST00000447124 ASF1AQ9Y294 204 aa20.1■□□□□ 0.81
SDC1-205ENST00000447124 NBASA2RRP1 2371 aa20.1■□□□□ 0.81
SDC1-205ENST00000447124 SETXQ7Z333 2677 aaKnown RBP20.09■□□□□ 0.81
SDC1-205ENST00000447124 IQCF5A8MTL0 148 aa20.09■□□□□ 0.81
SDC1-205ENST00000447124 C2orf74A8MZ97 194 aa20.09■□□□□ 0.81
SDC1-205ENST00000447124 QSOX1O00391 747 aa20.09■□□□□ 0.81
SDC1-205ENST00000447124 FGGP02679 453 aa20.09■□□□□ 0.81
SDC1-205ENST00000447124 PTPN4P29074 926 aa20.09■□□□□ 0.81
SDC1-205ENST00000447124 CSE1LP55060 971 aaKnown RBP20.09■□□□□ 0.81
SDC1-205ENST00000447124 SESN2P58004 480 aaPredicted RBP20.09■□□□□ 0.81
SDC1-205ENST00000447124 CCZ1BP86790 482 aa20.09■□□□□ 0.81
SDC1-205ENST00000447124 CCZ1P86791 482 aaPredicted RBP20.09■□□□□ 0.81
SDC1-205ENST00000447124 KCNC4Q03721 635 aa20.09■□□□□ 0.81
SDC1-205ENST00000447124 ZIC1Q15915 447 aa20.09■□□□□ 0.81
SDC1-205ENST00000447124 PCID2Q5JVF3 399 aa20.09■□□□□ 0.81
SDC1-205ENST00000447124 NLRP9Q7RTR0 991 aa20.09■□□□□ 0.81
SDC1-205ENST00000447124 TRIM73Q86UV7 250 aa20.09■□□□□ 0.81
SDC1-205ENST00000447124 VRK3Q8IV63 474 aa20.09■□□□□ 0.81
SDC1-205ENST00000447124 TBC1D21Q8IYX1 336 aa20.09■□□□□ 0.81
SDC1-205ENST00000447124 FLVCR1-AS1Q8TAF5 88 aa20.09■□□□□ 0.81
SDC1-205ENST00000447124 MR1Q95460 341 aa20.09■□□□□ 0.81
SDC1-205ENST00000447124 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.09■□□□□ 0.817e-6■■■■■ 27.5
SDC1-205ENST00000447124 LRFN5Q96NI6 719 aa20.09■□□□□ 0.81
SDC1-205ENST00000447124 OR2A14Q96R47 310 aa20.09■□□□□ 0.81
SDC1-205ENST00000447124 FAM60AQ9NP50 221 aa20.09■□□□□ 0.81
SDC1-205ENST00000447124 MARCH4Q9P2E8 410 aaPredicted RBP20.09■□□□□ 0.81
SDC1-205ENST00000447124 CDYLQ9Y232 598 aa20.09■□□□□ 0.81
SDC1-205ENST00000447124 TMEM150CB9EJG8 249 aa20.08■□□□□ 0.81
SDC1-205ENST00000447124 MEN1O00255 615 aa20.08■□□□□ 0.81
SDC1-205ENST00000447124 HCRTR1O43613 425 aa20.08■□□□□ 0.81
SDC1-205ENST00000447124 CCDC175P0C221 793 aa20.08■□□□□ 0.81
SDC1-205ENST00000447124 MSL3P1P0C860 447 aa20.08■□□□□ 0.81
SDC1-205ENST00000447124 RORAP35398 523 aa20.08■□□□□ 0.81
SDC1-205ENST00000447124 CRADDP78560 199 aa20.08■□□□□ 0.81
SDC1-205ENST00000447124 FASTKD1Q53R41 847 aaKnown RBP20.08■□□□□ 0.81
SDC1-205ENST00000447124 SPESP1Q6UW49 350 aa20.08■□□□□ 0.81
SDC1-205ENST00000447124 CDHR3Q6ZTQ4 885 aa20.08■□□□□ 0.81
SDC1-205ENST00000447124 DSELQ8IZU8 1212 aa20.08■□□□□ 0.81
SDC1-205ENST00000447124 PEX13Q92968 403 aa20.08■□□□□ 0.81
SDC1-205ENST00000447124 AP1M1Q9BXS5 423 aa20.08■□□□□ 0.81
SDC1-205ENST00000447124 PLAGL1Q9UM63 463 aa20.08■□□□□ 0.81
SDC1-205ENST00000447124 TDRKHQ9Y2W6 561 aaKnown RBP20.08■□□□□ 0.81
SDC1-205ENST00000447124 ASH1LQ9NR48 2969 aaKnown RBP20.08■□□□□ 0.8
SDC1-205ENST00000447124 MED13Q9UHV7 2174 aa20.07■□□□□ 0.8
SDC1-205ENST00000447124 GPC4O75487 556 aa20.07■□□□□ 0.8
SDC1-205ENST00000447124 CAPN1P07384 714 aa20.07■□□□□ 0.8
SDC1-205ENST00000447124 CHRM5P08912 532 aaPredicted RBP20.07■□□□□ 0.8
SDC1-205ENST00000447124 UGT2B7P16662 529 aa20.07■□□□□ 0.8
SDC1-205ENST00000447124 NR1D1P20393 614 aa20.07■□□□□ 0.8
SDC1-205ENST00000447124 CXCR5P32302 372 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms