RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 PPP2R1BP30154 601 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 STC1P52823 247 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 IRX1P78414 480 aaPredicted RBP12.68□□□□□ -0.38
PTCH1-207ENST00000429896 TSNQ15631 228 aaKnown RBP12.68□□□□□ -0.38
PTCH1-207ENST00000429896 TSC22D1Q15714 1073 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 MED27Q6P2C8 311 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 PARP8Q8N3A8 854 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 ZNF276Q8N554 614 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 SRFBP1Q8NEF9 429 aaKnown RBP12.68□□□□□ -0.38
PTCH1-207ENST00000429896 RAP2CQ9Y3L5 183 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 SIPA1L1O43166 1804 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 OR1F1O43749 312 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 VEGFDO43915 354 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 PTPRCAPQ14761 206 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 TMEM164Q5U3C3 297 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 IQCKQ8N0W5 287 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 DUSP12Q9UNI6 340 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 EGFP01133 1207 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 CHRM1P11229 460 aaPredicted RBP12.68□□□□□ -0.38
PTCH1-207ENST00000429896 ITGAXP20702 1163 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 CSNK1DP48730 415 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 GTF2H2Q13888 395 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 SLC5A9Q2M3M2 681 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 GTF2H2CQ6P1K8 395 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 R3HCC1LQ7Z5L2 792 aaKnown RBP12.68□□□□□ -0.38
PTCH1-207ENST00000429896 BATF3Q9NR55 127 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 H3BN98 237 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 MLLT3P42568 568 aaPredicted RBP12.67□□□□□ -0.38
PTCH1-207ENST00000429896 TMED10P49755 219 aaKnown RBP12.67□□□□□ -0.38
PTCH1-207ENST00000429896 TAS2R39P59534 338 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 ZNHIT3Q15649 155 aaPredicted RBP12.67□□□□□ -0.38
PTCH1-207ENST00000429896 ARMC3Q5W041 872 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 CYP2R1Q6VVX0 501 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 Q7L0L9 218 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 ARMC7Q9H6L4 198 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 IPPKQ9H8X2 491 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 APOBEC3BQ9UH17 382 aaKnown RBP12.67□□□□□ -0.38
PTCH1-207ENST00000429896 FOCADQ5VW36 1801 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 PEX11AO75192 247 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 IFNA14P01570 189 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 NUP62P37198 522 aaPredicted RBP12.67□□□□□ -0.38
PTCH1-207ENST00000429896 RPL38P63173 70 aaKnown RBP12.67□□□□□ -0.38
PTCH1-207ENST00000429896 FASTKQ14296 549 aaKnown RBP12.67□□□□□ -0.38
PTCH1-207ENST00000429896 TCTN1Q2MV58 587 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 C6orf62Q9GZU0 229 aaPredicted RBP12.67□□□□□ -0.38
PTCH1-207ENST00000429896 TFB2MQ9H5Q4 396 aaKnown RBP12.67□□□□□ -0.38
PTCH1-207ENST00000429896 ACSL5Q9ULC5 683 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 PRAMEF26H0Y7S4 382 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 THEGLP0DJG4 465 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 ZNF8P17098 575 aaPredicted RBP12.67□□□□□ -0.38
PTCH1-207ENST00000429896 ADSLP30566 484 aaPredicted RBP12.67□□□□□ -0.38
PTCH1-207ENST00000429896 HK2P52789 917 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 PNLIPRP1P54315 467 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 CDH13P55290 713 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 CCNIQ14094 377 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 NCF4Q15080 339 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 ZYG11AQ6WRX3 759 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 BNC2Q6ZN30 1099 aaPredicted RBP12.67□□□□□ -0.38
PTCH1-207ENST00000429896 PEX13Q92968 403 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 ADI1Q9BV57 179 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 RAD21L1Q9H4I0 556 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 ITM2CQ9NQX7 267 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 MTF2Q9Y483 593 aaPredicted RBP12.67□□□□□ -0.38
PTCH1-207ENST00000429896 LYVE1Q9Y5Y7 322 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 CFAP20Q9Y6A4 193 aaKnown RBP12.67□□□□□ -0.38
PTCH1-207ENST00000429896 ATXN2Q99700 1313 aaKnown RBP12.67□□□□□ -0.38
PTCH1-207ENST00000429896 LOC285556D6RIA3 1793 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 SRFP11831 508 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 PDK4Q16654 411 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 KLHL24Q6TFL4 600 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 CRTC1Q6UUV9 634 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 TMEM132CQ8N3T6 1108 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 TFGQ92734 400 aaPredicted RBP12.67□□□□□ -0.38
PTCH1-207ENST00000429896 SCRN2Q96FV2 425 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 RIBC2Q9H4K1 309 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 TRPM7Q96QT4 1865 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 C5orf67F2Z3F1 127 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 CTHP32929 405 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 SIM2Q14190 667 aaPredicted RBP12.67□□□□□ -0.38
PTCH1-207ENST00000429896 TRIM16LQ309B1 348 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 ZDHHC24Q6UX98 284 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 CUZD1Q86UP6 607 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 LENG8Q96PV6 779 aaPredicted RBP12.67□□□□□ -0.38
PTCH1-207ENST00000429896 MIPEPQ99797 713 aa12.67□□□□□ -0.38
PTCH1-207ENST00000429896 ACRV1P26436 265 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 IL12RB1P42701 662 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 AVPR1BP47901 424 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 CILP2Q8IUL8 1156 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 SCUBE1Q8IWY4 988 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 NOL11Q9H8H0 719 aaKnown RBP12.66□□□□□ -0.38
PTCH1-207ENST00000429896 PLLPQ9Y342 182 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 SHOX2O60902 331 aaPredicted RBP12.66□□□□□ -0.38
PTCH1-207ENST00000429896 BDKRB1P46663 353 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 ZNF57Q68EA5 555 aaPredicted RBP12.66□□□□□ -0.38
PTCH1-207ENST00000429896 PAQR3Q6TCH7 311 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 SCIMPQ6UWF3 145 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 NEK10Q6ZWH5 1172 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 C19orf18Q8NEA5 215 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 METTL21AQ8WXB1 218 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 NDUFAF1Q9Y375 327 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms