RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 TMEM98Q9Y2Y6 226 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 ARIH1Q9Y4X5 557 aaPredicted RBP8.2□□□□□ -1.1
CD44-208ENST00000428726 SCN2AQ99250 2005 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 TRBV23OR9-2A0A075B6M9 112 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 FXYD1O00168 92 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 S100BP04271 92 aaPredicted RBP8.2□□□□□ -1.1
CD44-208ENST00000428726 RHOP08100 348 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 ITGALP20701 1170 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 GSK3BP49841 420 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 ADGRE1Q14246 886 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 STARD3Q14849 445 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 NANOGP8Q6NSW7 305 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 PROKR1Q8TCW9 393 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 DOK4Q8TEW6 326 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 OTUB1Q96FW1 271 aaPredicted RBP8.2□□□□□ -1.1
CD44-208ENST00000428726 KCTD14Q9BQ13 255 aaPredicted RBP8.2□□□□□ -1.1
CD44-208ENST00000428726 SLC25A23Q9BV35 468 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 SEZ6LQ9BYH1 1024 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 NANOGQ9H9S0 305 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 LMCD1Q9NZU5 365 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 VAPAQ9P0L0 249 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 EPS15L1Q9UBC2 864 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 SUN2Q9UH99 717 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 RIMS3Q9UJD0 308 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 OR51B4Q9Y5P0 310 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 CACNA1IQ9P0X4 2223 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 EI24O14681 340 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 ARPC2O15144 300 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 CHEK2O96017 543 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 ZNF7P17097 686 aaPredicted RBP8.19□□□□□ -1.1
CD44-208ENST00000428726 TNFRSF1BP20333 461 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 HMGCLP35914 325 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 POLR2JP52435 117 aaKnown RBP8.19□□□□□ -1.1
CD44-208ENST00000428726 RPL26P61254 145 aaKnown RBP8.19□□□□□ -1.1
CD44-208ENST00000428726 MAP7Q14244 749 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 ACOX1Q15067 660 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 TYSND1Q2T9J0 566 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 PTCHD3Q3KNS1 767 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 TBC1D25Q3MII6 688 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 ENPP6Q6UWR7 440 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 UBE2R2Q712K3 238 aaPredicted RBP8.19□□□□□ -1.1
CD44-208ENST00000428726 CHST9Q7L1S5 443 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 C11orf96Q7Z7L8 435 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 TMEM126BQ8IUX1 230 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 CMTR2Q8IYT2 770 aaKnown RBP8.19□□□□□ -1.1
CD44-208ENST00000428726 RGL4Q8IZJ4 473 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 FRMD1Q8N878 549 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 OR2AP1Q8NGE2 309 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 OR56A4Q8NGH8 313 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 PLD4Q96BZ4 506 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 SAMD11Q96NU1 681 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 P2RY13Q9BPV8 354 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 SLC6A17Q9H1V8 727 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 TFB2MQ9H5Q4 396 aaKnown RBP8.19□□□□□ -1.1
CD44-208ENST00000428726 SMURF2Q9HAU4 748 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 PAK6Q9NQU5 681 aaPredicted RBP8.19□□□□□ -1.1
CD44-208ENST00000428726 OPTCQ9UBM4 332 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 TMPRSS11EQ9UL52 423 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 ASPMQ8IZT6 3477 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 BCAS2O75934 225 aaPredicted RBP8.19□□□□□ -1.1
CD44-208ENST00000428726 SLC5A2P31639 672 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 ATP4BP51164 291 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 CYP4F2P78329 520 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 LSAMPQ13449 338 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 GRM2Q14416 872 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 ANKDD1AQ495B1 522 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 OGFRL1Q5TC84 451 aaPredicted RBP8.19□□□□□ -1.1
CD44-208ENST00000428726 CYP20A1Q6UW02 462 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 GALNT5Q7Z7M9 940 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 PHYKPLQ8IUZ5 450 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 PLD3Q8IV08 490 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 SLC44A2Q8IWA5 706 aaPredicted RBP8.19□□□□□ -1.1
CD44-208ENST00000428726 REM2Q8IYK8 340 aaPredicted RBP8.19□□□□□ -1.1
CD44-208ENST00000428726 SELENOMQ8WWX9 145 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 TCF12Q99081 682 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 SORBS1Q9BX66 1292 aaKnown RBP8.19□□□□□ -1.1
CD44-208ENST00000428726 DERL2Q9GZP9 239 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 SUV39H2Q9H5I1 410 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 RPF2Q9H7B2 306 aaKnown RBP8.19□□□□□ -1.1
CD44-208ENST00000428726 ATP13A3Q9H7F0 1226 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 TM7SF3Q9NS93 570 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 TRAV19A0A0A6YYK7 116 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 KLHL33A6NCF5 533 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 WASHC1A8K0Z3 465 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 PRAMEF4O60810 478 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 ESRRBO95718 433 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 SNAP29O95721 258 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 IGSF6O95976 241 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 FGF4P08620 206 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 EEF1B2P24534 225 aaKnown RBP8.19□□□□□ -1.1
CD44-208ENST00000428726 VARSP26640 1264 aaKnown RBP8.19□□□□□ -1.1
CD44-208ENST00000428726 SERPINA4P29622 427 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 CDKN2CP42773 168 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 RECQLP46063 649 aaPredicted RBP8.19□□□□□ -1.1
CD44-208ENST00000428726 SOX9P48436 509 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 PPP3CCP48454 512 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 PSMD8P48556 350 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 ADARP55265 1226 aaKnown RBP8.19□□□□□ -1.1
CD44-208ENST00000428726 PRKCQQ04759 706 aa8.19□□□□□ -1.1
CD44-208ENST00000428726 CACNG1Q06432 222 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms