RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 YJEFN3A6XGL0 299 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 ZNF487B1APH4 448 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 E7ENQ6 273 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 H7C0C1 242 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 APOC4-APOC2K7ER74 178 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 EEF2KO00418 725 aaKnown RBP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 LIASO43766 372 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 UGDHO60701 494 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 OAZ2O95190 189 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 RTN3O95197 1032 aaPredicted RBP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 F9P00740 461 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 KRT14P02533 472 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 APOC2P02655 101 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 ALPLP05186 524 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 CSF2RAP15509 400 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 TGM2P21980 687 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 CYP2F1P24903 491 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 PPM1AP35813 382 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 CDKN2BP42772 138 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 MAGEA11P43364 429 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 ATP5OP48047 213 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 KCNJ1P48048 391 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 RPL34P49207 117 aaKnown RBP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 GLUD2P49448 558 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 AIF1P55008 147 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 SLC12A2P55011 1212 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 VCPP55072 806 aaKnown RBP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 HDAC4P56524 1084 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 TPI1P60174 286 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 EIF3EP60228 445 aaKnown RBP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 KRTAP10-9P60411 292 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 YWHAGP61981 247 aaKnown RBP eCLIP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 RPL10AP62906 217 aaKnown RBP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 DEFB103AP81534 67 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 OTUD4Q01804 1114 aaKnown RBP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 ROR1Q01973 937 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 SMARCB1Q12824 385 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 SEMA3BQ13214 749 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 BYSLQ13895 437 aaKnown RBP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 DPYSL3Q14195 570 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 GPNMBQ14956 572 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 VEPH1Q14D04 833 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 SIX1Q15475 284 aaPredicted RBP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 TAF5Q15542 800 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 TAF12Q16514 161 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 CCNG2Q16589 344 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 USP41Q3LFD5 358 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 ARHGAP15Q53QZ3 475 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 RAB41Q5JT25 222 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 MANEAQ5SRI9 462 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 BEND6Q5SZJ8 279 aaPredicted RBP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 CFAP58Q5T655 872 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 ERMARDQ5T6L9 678 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 IZUMO3Q5VZ72 239 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 TTC27Q6P3X3 843 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 PSRC1Q6PGN9 363 aaPredicted RBP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 C1orf228Q6PIY5 440 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 PRSS55Q6UWB4 352 aaPredicted RBP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 CCNI2Q6ZMN8 369 aaPredicted RBP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 RBM44Q6ZP01 1051 aaKnown RBP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 DENND5BQ6ZUT9 1274 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 BBS12Q6ZW61 710 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 BEND5Q7L4P6 421 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 UBE2Q1Q7Z7E8 422 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 TAC4Q86UU9 113 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 CCDC25Q86WR0 208 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 CDKL3Q8IVW4 592 aaPredicted RBP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 KRT222Q8N1A0 295 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 NUP93Q8N1F7 819 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 SCML4Q8N228 414 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 CCDC185Q8N715 623 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 EIF1ADQ8N9N8 165 aaKnown RBP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 COLGALT1Q8NBJ5 622 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 ZMIZ2Q8NF64 920 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 ACTL9Q8TC94 416 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 ADAMTS15Q8TE58 950 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 AENQ8WTP8 325 aaKnown RBP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 UBLCP1Q8WVY7 318 aaPredicted RBP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 RAPGEF5Q92565 580 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 NDRG1Q92597 394 aaKnown RBP3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 P3H4Q92791 437 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 FBXO32Q969P5 355 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 SLC25A28Q96A46 364 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 B3GALT6Q96L58 329 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 C8orf48Q96LL4 319 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 GDAP1L1Q96MZ0 367 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 SERPINB11Q96P15 392 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 KCNK16Q96T55 309 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 NPY6RQ99463 290 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 PKMYT1Q99640 499 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 FERMT1Q9BQL6 677 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 ERP44Q9BS26 406 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 FAM129AQ9BZQ8 928 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 UBXN6Q9BZV1 441 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 NACA2Q9H009 215 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 LRRC19Q9H756 370 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 PCDH9Q9HC56 1237 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 CSNK1G1Q9HCP0 422 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 MLXIPLQ9NP71 852 aa3.84□□□□□ -1.79
HMGB3P20-201ENST00000417997 ABCC13Q9NSE7 274 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 94.8 ms