RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 AHI1Q8N157 1196 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 CENPNQ96H22 339 aaPredicted RBP13.12□□□□□ -0.31
VPS54-203ENST00000409558 CARS2Q9HA77 564 aaKnown RBP13.12□□□□□ -0.31
VPS54-203ENST00000409558 CLK4Q9HAZ1 481 aaKnown RBP13.12□□□□□ -0.31
VPS54-203ENST00000409558 TMEM202A6NGA9 273 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 HOXA2O43364 376 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 TGM5O43548 720 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 KCNH1O95259 989 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 RECQLP46063 649 aaPredicted RBP13.11□□□□□ -0.31
VPS54-203ENST00000409558 GRM2Q14416 872 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 OR4F3Q6IEY1 312 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 SLC13A3Q8WWT9 602 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 SDCCAG3Q96C92 435 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 ZNF597Q96LX8 424 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 ACTL8Q9H568 366 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 PRDM8Q9NQV8 689 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 PNPLA3Q9NST1 481 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 B4GALT6Q9UBX8 382 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 SCN5AQ14524 2016 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 CXCL14O95715 111 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 CCR7P32248 378 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 ETV3P41162 512 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 PPP3CCP48454 512 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 HSPA13P48723 471 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 GALNT1Q10472 559 aaPredicted RBP13.11□□□□□ -0.31
VPS54-203ENST00000409558 TRAP1Q12931 704 aaKnown RBP13.11□□□□□ -0.31
VPS54-203ENST00000409558 CRTC1Q6UUV9 634 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 FAM120BQ96EK7 910 aaKnown RBP13.11□□□□□ -0.31
VPS54-203ENST00000409558 TPD52L3Q96J77 140 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 CCDC138Q96M89 665 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 GPATCH1Q9BRR8 931 aaKnown RBP13.11□□□□□ -0.31
VPS54-203ENST00000409558 COMMD8Q9NX08 183 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 COMMD3-BMI1R4GMX3 469 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 BBIP1A8MTZ0 92 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 KPNA3O00505 521 aaPredicted RBP13.11□□□□□ -0.31
VPS54-203ENST00000409558 LSM1O15116 133 aaKnown RBP13.11□□□□□ -0.31
VPS54-203ENST00000409558 PDYNP01213 254 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 LHCGRP22888 699 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 MEF2AQ02078 507 aaPredicted RBP13.11□□□□□ -0.31
VPS54-203ENST00000409558 XKR5Q6UX68 686 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 MINDY1Q8N5J2 469 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 ADAMTS19Q8TE59 1207 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 ZFYVE19Q96K21 471 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 CDK5RAP1Q96SZ6 601 aaKnown RBP13.11□□□□□ -0.31
VPS54-203ENST00000409558 CWH43Q9H720 699 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 PKD2L2Q9NZM6 624 aa13.11□□□□□ -0.31
VPS54-203ENST00000409558 IFRD1O00458 451 aaPredicted RBP13.1□□□□□ -0.31
VPS54-203ENST00000409558 PFDN1O60925 122 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 TRMUO75648 421 aaKnown RBP13.1□□□□□ -0.31
VPS54-203ENST00000409558 SOD2P04179 222 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 DNAJB1P25685 340 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 SPAM1P38567 509 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 SUOXP51687 545 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 TRAF3Q13114 568 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 NHSL2Q5HYW2 709 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 CACHD1Q5VU97 1274 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 TXNDC11Q6PKC3 985 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 SPATA19Q7Z5L4 167 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 HID1Q8IV36 788 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 NRTNQ99748 197 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 C9orf16Q9BUW7 83 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 NLRC5Q86WI3 1866 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 SMIM31A0A1B0GVY4 71 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 FAM234BA2RU67 622 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 PGRP06401 933 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 VARSP26640 1264 aaKnown RBP13.1□□□□□ -0.31
VPS54-203ENST00000409558 GNPDA1P46926 289 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 STARD3Q14849 445 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 C16orf72Q14CZ0 275 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 UAP1L1Q3KQV9 507 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 CCSMST1Q4G0I0 132 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 IER5LQ5T953 404 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 SNX20Q7Z614 316 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 FRS2Q8WU20 508 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 GPRC5BQ9NZH0 403 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 TDRKHQ9Y2W6 561 aaKnown RBP13.1□□□□□ -0.31
VPS54-203ENST00000409558 A0A1W2PPW3 197 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 DGCR6Q14129 220 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 SLC44A2Q8IWA5 706 aaPredicted RBP13.1□□□□□ -0.31
VPS54-203ENST00000409558 OR2AP1Q8NGE2 309 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 MYRFLQ96LU7 910 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 TTLL2Q9BWV7 592 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 SLC46A2Q9BY10 475 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 LRRC3Q9BY71 257 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 CERS4Q9HA82 394 aa13.1□□□□□ -0.31
VPS54-203ENST00000409558 RSL24D1Q9UHA3 163 aaKnown RBP13.1□□□□□ -0.31
VPS54-203ENST00000409558 H3BNH8 94 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 RGS14O43566 566 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 ANXA5P08758 320 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 MEP1AQ16819 746 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 OR7A2PQ8NGA2 310 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 MIPOL1Q8TD10 442 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 HSPBAP1Q96EW2 488 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 APIPQ96GX9 242 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 ZFRQ96KR1 1074 aaKnown RBP13.09□□□□□ -0.31
VPS54-203ENST00000409558 ZNF382Q96SR6 550 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 BRD9Q9H8M2 597 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 AGPAT4Q9NRZ5 378 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 SMPD3Q9NY59 655 aaPredicted RBP13.09□□□□□ -0.31
VPS54-203ENST00000409558 NUDT4Q9NZJ9 180 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms