RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 MRGPRX3Q96LB0 322 aa10.9□□□□□ -0.67
TCOF1-203ENST00000394269 MCCC1Q96RQ3 725 aaPredicted RBP10.9□□□□□ -0.67
TCOF1-203ENST00000394269 CIB1Q99828 191 aa10.9□□□□□ -0.67
TCOF1-203ENST00000394269 TBCDQ9BTW9 1192 aa10.9□□□□□ -0.67
TCOF1-203ENST00000394269 THUMPD3Q9BV44 507 aaKnown RBP10.9□□□□□ -0.67
TCOF1-203ENST00000394269 CMTM6Q9NX76 183 aa10.9□□□□□ -0.67
TCOF1-203ENST00000394269 KANSL1LA0AUZ9 987 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 SAC3D1A6NKF1 404 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 K7ESM1 405 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 RSL1D1O76021 490 aaKnown RBP10.89□□□□□ -0.67
TCOF1-203ENST00000394269 FGF19O95750 216 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 GSNP06396 782 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 CKMT2P17540 419 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 SLC6A2P23975 617 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 GCKP35557 465 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 FOLH1Q04609 750 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 CCSMST1Q4G0I0 132 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 PRSS36Q5K4E3 855 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 RAET1GQ6H3X3 334 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 CRTC3Q6UUV7 619 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 PARS2Q7L3T8 475 aaKnown RBP10.89□□□□□ -0.67
TCOF1-203ENST00000394269 SPATA19Q7Z5L4 167 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 BPIFB1Q8TDL5 484 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 MTERF1Q99551 399 aaKnown RBP10.89□□□□□ -0.67
TCOF1-203ENST00000394269 NUSAP1Q9BXS6 441 aaKnown RBP10.89□□□□□ -0.67
TCOF1-203ENST00000394269 CEP44Q9C0F1 390 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 MRGBPQ9NV56 204 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 LZTS1Q9Y250 596 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 A0A1W2PP18 115 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 RNASEH1O60930 286 aaKnown RBP10.89□□□□□ -0.67
TCOF1-203ENST00000394269 EPHX1P07099 455 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 EFNA1P20827 205 aaPredicted RBP10.89□□□□□ -0.67
TCOF1-203ENST00000394269 PDHA2P29803 388 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 EPHA5P54756 1037 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 BLMHQ13867 455 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 FAM174BQ3ZCQ3 159 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 C6orf52Q5T4I8 152 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 CFAP206Q8IYR0 622 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 LIX1Q8N485 282 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 LYSMD1Q96S90 227 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 KCTD14Q9BQ13 255 aaPredicted RBP10.89□□□□□ -0.67
TCOF1-203ENST00000394269 OR2AG1Q9H205 316 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 PARVBQ9HBI1 364 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 DYRK4Q9NR20 520 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 TRANK1O15050 2925 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 HEPACAM2A8MVW5 462 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 RGS14O43566 566 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 CLDN9O95484 217 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 ATP6V1B2P21281 511 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 AOAHP28039 575 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 LIPEQ05469 1076 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 NAE1Q13564 534 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 CYP51A1Q16850 503 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 PGS1Q32NB8 556 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 CAPRIN2Q6IMN6 1127 aaKnown RBP10.89□□□□□ -0.67
TCOF1-203ENST00000394269 IYDQ6PHW0 289 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 PDSS2Q86YH6 399 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 PDPRQ8NCN5 879 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 ASZ1Q8WWH4 475 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 HERVK_113Q902F9 699 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 DPY30Q9C005 99 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 TMEM181Q9P2C4 612 aa10.89□□□□□ -0.67
TCOF1-203ENST00000394269 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.89□□□□□ -0.67
TCOF1-203ENST00000394269 EIF3LQ9Y262 564 aaKnown RBP10.89□□□□□ -0.67
TCOF1-203ENST00000394269 LSM1O15116 133 aaKnown RBP10.88□□□□□ -0.67
TCOF1-203ENST00000394269 SCAMP1O15126 338 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 HNRNPA1P09651 372 aaKnown RBP eCLIP10.88□□□□□ -0.67
TCOF1-203ENST00000394269 BDKRB1P46663 353 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 GNPDA1P46926 289 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 TMEM115Q12893 351 aaPredicted RBP10.88□□□□□ -0.67
TCOF1-203ENST00000394269 TBCELQ5QJ74 424 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 CHRDL2Q6WN34 429 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 TRMT11Q7Z4G4 463 aaKnown RBP10.88□□□□□ -0.67
TCOF1-203ENST00000394269 EBPLQ9BY08 206 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 YIPF3Q9GZM5 350 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 VCXQ9H320 206 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 MRPL40Q9NQ50 206 aaKnown RBP10.88□□□□□ -0.67
TCOF1-203ENST00000394269 ARHGAP10A1A4S6 786 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 PDYNP01213 254 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 PEX19P40855 299 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 CHIT1Q13231 466 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 GK3PQ14409 553 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 STARD3Q14849 445 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 ZXDCQ2QGD7 858 aaPredicted RBP10.88□□□□□ -0.67
TCOF1-203ENST00000394269 XKR7Q5GH72 579 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 RNF220Q5VTB9 566 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 IRGCQ6NXR0 463 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 LIPIQ6XZB0 460 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 RASGEF1AQ8N9B8 481 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 OSCP1Q8WVF1 389 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 PPP2R3CQ969Q6 453 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 ROPN1LQ96C74 230 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 APOLD1Q96LR9 279 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 ANKRD27Q96NW4 1050 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 ZBTB18Q99592 522 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 ALG2Q9H553 416 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 SLC32A1Q9H598 525 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 LRTM1Q9HBL6 345 aa10.88□□□□□ -0.67
TCOF1-203ENST00000394269 LEF1Q9UJU2 399 aaPredicted RBP10.88□□□□□ -0.67
TCOF1-203ENST00000394269 MYOCOSA0A1B0GUC4 107 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms