RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 FFAR2O15552 330 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 ITM2AO43736 263 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 GADD45GO95257 159 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 PGLSO95336 258 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 NFATC1O95644 943 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 INHAP05111 366 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 AOC1P19801 751 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 PPP2R2BQ00005 443 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 IRF9Q00978 393 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 CNPY1Q3B7I2 92 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 TIGD5Q53EQ6 642 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 SH3D19Q5HYK7 790 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 OLFML2AQ68BL7 652 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 NCBP2-AS2Q69YL0 99 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 OGFOD2Q6N063 350 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 USP30Q70CQ3 517 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 ZNF563Q8TA94 476 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 PLD4Q96BZ4 506 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 CDKN2AIPNLQ96HQ2 116 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 DUSP26Q9BV47 211 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 EBPLQ9BY08 206 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 YTHDF1Q9BYJ9 559 aaKnown RBP11.24□□□□□ -0.61
PTPRF-203ENST00000372407 SP140LQ9H930 580 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 GPN1Q9HCN4 374 aaPredicted RBP11.24□□□□□ -0.61
PTPRF-203ENST00000372407 ZNF282Q9UDV7 671 aaPredicted RBP11.24□□□□□ -0.61
PTPRF-203ENST00000372407 TCHHQ07283 1943 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 IQCMA0A1B0GVH7 501 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 SIX3O95343 332 aaPredicted RBP11.24□□□□□ -0.61
PTPRF-203ENST00000372407 POU2F1P14859 743 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 ALDH4A1P30038 563 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 CCR10P46092 362 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 KLF1Q13351 362 aaPredicted RBP11.24□□□□□ -0.61
PTPRF-203ENST00000372407 KCNJ11Q14654 390 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 CARTPTQ16568 116 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 GPR153Q6NV75 609 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 CTU1Q7Z7A3 348 aaKnown RBP11.24□□□□□ -0.61
PTPRF-203ENST00000372407 ZNF784Q8NCA9 323 aaPredicted RBP11.24□□□□□ -0.61
PTPRF-203ENST00000372407 TRPV3Q8NET8 790 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 OR13C4Q8NGS5 318 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 PIGXQ8TBF5 258 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 ZNF570Q96NI8 536 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 ZNF347Q96SE7 839 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 PIGVQ9NUD9 493 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 DHRS7Q9Y394 339 aa11.24□□□□□ -0.61
PTPRF-203ENST00000372407 A8MT66 165 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 EOMESO95936 686 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 VIPP01282 170 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 IFNA6P05013 189 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 PRPS1L1P21108 318 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 GPX6P59796 221 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 KCNA10Q16322 511 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 MSANTD2Q6P1R3 559 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 TMEM192Q8IY95 271 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 GLIS1Q8NBF1 620 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 ZMIZ2Q8NF64 920 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 SNX33Q8WV41 574 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 C1QTNF1Q9BXJ1 281 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 MFSD1Q9H3U5 465 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 GIN1Q9NXP7 522 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 SLC17A6Q9P2U8 582 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 SRRDQ9UH36 339 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 PPM1HQ9ULR3 514 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 OAZ3Q9UMX2 235 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 PTPRJQ12913 1337 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 ZNF99A8MXY4 864 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-203ENST00000372407 DLX3O60479 287 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 LDOC1O95751 146 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-203ENST00000372407 RPLP0P05388 317 aaKnown RBP11.23□□□□□ -0.61
PTPRF-203ENST00000372407 FAM163BP0C2L3 166 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 NT5EP21589 574 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 RAPSNQ13702 412 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 TMEM220Q6QAJ8 160 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 KLHL24Q6TFL4 600 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 ZC3HC1Q86WB0 502 aaKnown RBP11.23□□□□□ -0.61
PTPRF-203ENST00000372407 ARL14EPQ8N8R7 260 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-203ENST00000372407 ACDQ96AP0 544 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 LRRC58Q96CX6 371 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 ZNF599Q96NL3 588 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 TUBGCP5Q96RT8 1024 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 KCNN2Q9H2S1 579 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 SLC35C2Q9NQQ7 365 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 CKLFQ9UBR5 152 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 CLEC4AQ9UMR7 237 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 EPHX1P07099 455 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 CFHP08603 1231 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 SLC10A3P09131 477 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 EFNA1P20827 205 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-203ENST00000372407 FCHO2Q0JRZ9 810 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 FAM91A1Q658Y4 838 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 FRMD7Q6ZUT3 714 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 PIK3R3Q92569 461 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 TMCO6Q96DC7 493 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 MTERF1Q99551 399 aaKnown RBP11.23□□□□□ -0.61
PTPRF-203ENST00000372407 GPATCH1Q9BRR8 931 aaKnown RBP11.23□□□□□ -0.61
PTPRF-203ENST00000372407 MIR1-1HGQ9H1L0 117 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 C1orf21Q9H246 121 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 AKTIPQ9H8T0 292 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 RBPJLQ9UBG7 517 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 CIDEBQ9UHD4 219 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 PPIEQ9UNP9 301 aaKnown RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms