RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 RAB44Q7Z6P3 723 aaPredicted RBP19.41■□□□□ 0.7
CLN3-205ENST00000359984 SPATS2Q86XZ4 545 aaKnown RBP19.41■□□□□ 0.7
CLN3-205ENST00000359984 MCOLN3Q8TDD5 553 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 L3HYPDHQ96EM0 354 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 RMDN2Q96LZ7 410 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 ERVK-6Q9BXR3 956 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 TRIM54Q9BYV2 358 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 RABEP2Q9H5N1 569 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 FGFR1OP2Q9NVK5 253 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 TRNAU1APQ9NX07 287 aaKnown RBP19.41■□□□□ 0.7
CLN3-205ENST00000359984 KRT87PA6NCN2 255 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 STX16-NPEPL1H3BU86 382 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 STX16O14662 325 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 BCAT2O15382 392 aaPredicted RBP19.41■□□□□ 0.7
CLN3-205ENST00000359984 LYPLA1O75608 230 aaPredicted RBP19.41■□□□□ 0.7
CLN3-205ENST00000359984 C1orf105O95561 183 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 HIST1H2AGP0C0S8 130 aaPredicted RBP19.41■□□□□ 0.7
CLN3-205ENST00000359984 SLC35G4P0C7Q5 338 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 HIST1H2ADP20671 130 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 AK4P27144 223 aaPredicted RBP19.41■□□□□ 0.7
CLN3-205ENST00000359984 BDKRB1P46663 353 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 SLC1A6P48664 564 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 CDKL1Q00532 357 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 LRP8Q14114 963 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 SETDB1Q15047 1291 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 C18orf21Q32NC0 220 aaPredicted RBP19.41■□□□□ 0.7
CLN3-205ENST00000359984 UNC50Q53HI1 259 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 PARGQ86W56 976 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 RHBDF1Q96CC6 855 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 HIST1H2AHQ96KK5 128 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 HIST1H2AJQ99878 128 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 EGFL8Q99944 293 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 H2AFJQ9BTM1 129 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 THAP1Q9NVV9 213 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 ARL15Q9NXU5 204 aa19.41■□□□□ 0.7
CLN3-205ENST00000359984 PTBP2Q9UKA9 531 aaKnown RBP19.41■□□□□ 0.7
CLN3-205ENST00000359984 DRD4P21917 467 aa19.4■□□□□ 0.7
CLN3-205ENST00000359984 MAP4P27816 1152 aaKnown RBP19.4■□□□□ 0.7
CLN3-205ENST00000359984 EEF1DP29692 281 aaKnown RBP19.4■□□□□ 0.7
CLN3-205ENST00000359984 CCR10P46092 362 aa19.4■□□□□ 0.7
CLN3-205ENST00000359984 DHPSP49366 369 aaPredicted RBP19.4■□□□□ 0.7
CLN3-205ENST00000359984 CSNK1EP49674 416 aaKnown RBP19.4■□□□□ 0.7
CLN3-205ENST00000359984 ABCE1P61221 599 aaKnown RBP19.4■□□□□ 0.7
CLN3-205ENST00000359984 OCRLQ01968 901 aa19.4■□□□□ 0.7
CLN3-205ENST00000359984 PLK5Q496M5 336 aa19.4■□□□□ 0.7
CLN3-205ENST00000359984 CCSMST1Q4G0I0 132 aa19.4■□□□□ 0.7
CLN3-205ENST00000359984 CDKL4Q5MAI5 379 aa19.4■□□□□ 0.7
CLN3-205ENST00000359984 LYSMD4Q5XG99 296 aa19.4■□□□□ 0.7
CLN3-205ENST00000359984 UNC5DQ6UXZ4 953 aa19.4■□□□□ 0.7
CLN3-205ENST00000359984 RPS27LQ71UM5 84 aaKnown RBP19.4■□□□□ 0.7
CLN3-205ENST00000359984 TFGQ92734 400 aaPredicted RBP19.4■□□□□ 0.7
CLN3-205ENST00000359984 ESAMQ96AP7 390 aa19.4■□□□□ 0.7
CLN3-205ENST00000359984 DRC3Q9H069 523 aa19.4■□□□□ 0.7
CLN3-205ENST00000359984 PRDM8Q9NQV8 689 aa19.4■□□□□ 0.7
CLN3-205ENST00000359984 THADAQ6YHU6 1953 aa19.4■□□□□ 0.7
CLN3-205ENST00000359984 TMEM114B3SHH9 223 aa19.39■□□□□ 0.7
CLN3-205ENST00000359984 TAPBPO15533 448 aa19.39■□□□□ 0.7
CLN3-205ENST00000359984 EDF1O60869 148 aaKnown RBP19.39■□□□□ 0.7
CLN3-205ENST00000359984 ANXA5P08758 320 aa19.39■□□□□ 0.7
CLN3-205ENST00000359984 AP1S2P56377 157 aa19.39■□□□□ 0.7
CLN3-205ENST00000359984 CFAP157Q5JU67 520 aa19.39■□□□□ 0.7
CLN3-205ENST00000359984 SULT1C3Q6IMI6 304 aa19.39■□□□□ 0.7
CLN3-205ENST00000359984 NRROSQ86YC3 692 aa19.39■□□□□ 0.7
CLN3-205ENST00000359984 PHACTR4Q8IZ21 702 aa19.39■□□□□ 0.7
CLN3-205ENST00000359984 PHC3Q8NDX5 983 aa19.39■□□□□ 0.7
CLN3-205ENST00000359984 PITPNM3Q9BZ71 974 aa19.39■□□□□ 0.7
CLN3-205ENST00000359984 FAM107BQ9H098 131 aa19.39■□□□□ 0.7
CLN3-205ENST00000359984 TBC1D29Q9UFV1 150 aa19.39■□□□□ 0.7
CLN3-205ENST00000359984 ASB1Q9Y576 335 aa19.39■□□□□ 0.7
CLN3-205ENST00000359984 CFAP20Q9Y6A4 193 aaKnown RBP19.39■□□□□ 0.7
CLN3-205ENST00000359984 ANKRD12Q6UB98 2062 aa19.39■□□□□ 0.69
CLN3-205ENST00000359984 LRP4O75096 1905 aa19.39■□□□□ 0.69
CLN3-205ENST00000359984 FAM86C2PA6NEL3 165 aa19.39■□□□□ 0.69
CLN3-205ENST00000359984 IFRD1O00458 451 aaPredicted RBP19.39■□□□□ 0.69
CLN3-205ENST00000359984 VILLO15195 856 aa19.39■□□□□ 0.69
CLN3-205ENST00000359984 NPHS1O60500 1241 aa19.39■□□□□ 0.69
CLN3-205ENST00000359984 SUPT7LO94864 414 aa19.39■□□□□ 0.69
CLN3-205ENST00000359984 SP9P0CG40 484 aa19.39■□□□□ 0.69
CLN3-205ENST00000359984 AFF3P51826 1226 aaKnown RBP19.39■□□□□ 0.69
CLN3-205ENST00000359984 NXPH1P58417 271 aa19.39■□□□□ 0.69
CLN3-205ENST00000359984 RCN2Q14257 317 aa19.39■□□□□ 0.69
CLN3-205ENST00000359984 CLCA4Q14CN2 919 aa19.39■□□□□ 0.69
CLN3-205ENST00000359984 FBXO15Q8NCQ5 510 aaPredicted RBP19.39■□□□□ 0.69
CLN3-205ENST00000359984 GPBAR1Q8TDU6 330 aa19.39■□□□□ 0.69
CLN3-205ENST00000359984 CNDP1Q96KN2 507 aa19.39■□□□□ 0.69
CLN3-205ENST00000359984 INSM2Q96T92 566 aaPredicted RBP19.39■□□□□ 0.69
CLN3-205ENST00000359984 GSTO2Q9H4Y5 243 aa19.39■□□□□ 0.69
CLN3-205ENST00000359984 DNAJC28Q9NX36 388 aa19.39■□□□□ 0.69
CLN3-205ENST00000359984 ASF1AQ9Y294 204 aa19.39■□□□□ 0.69
CLN3-205ENST00000359984 ATXN2Q99700 1313 aaKnown RBP19.38■□□□□ 0.69
CLN3-205ENST00000359984 PABPN1LA6NDY0 278 aaKnown RBP19.38■□□□□ 0.69
CLN3-205ENST00000359984 PDZK1P1A8MUH7 402 aa19.38■□□□□ 0.69
CLN3-205ENST00000359984 CHRNGP07510 517 aa19.38■□□□□ 0.69
CLN3-205ENST00000359984 RPS17P08708 135 aaKnown RBP19.38■□□□□ 0.69
CLN3-205ENST00000359984 ACTR1BP42025 376 aa19.38■□□□□ 0.69
CLN3-205ENST00000359984 BLKP51451 505 aa19.38■□□□□ 0.69
CLN3-205ENST00000359984 ACTR1AP61163 376 aa19.38■□□□□ 0.69
CLN3-205ENST00000359984 UAP1L1Q3KQV9 507 aa19.38■□□□□ 0.69
CLN3-205ENST00000359984 ZNF528Q3MIS6 628 aa19.38■□□□□ 0.69
CLN3-205ENST00000359984 ARL13AQ5H913 290 aaPredicted RBP19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms