RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 FKBPLQ9UIM3 349 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 MKLN1Q9UL63 735 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 ISPDA4D126 451 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 OR14I1A6ND48 311 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 OR51F1A6NGY5 319 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 ERN1O75460 977 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 RFPL1O75677 317 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 IFNA6P05013 189 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 PRKACGP22612 351 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 CSTF2P33240 577 aaKnown RBP eCLIP19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 RGS8P57771 180 aaPredicted RBP19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 HMGCS1Q01581 520 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 RAB39AQ14964 217 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 SWI5Q1ZZU3 235 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 FNDC3BQ53EP0 1204 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 OR2T5Q6IEZ7 315 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 KLHL35Q6PF15 583 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 OR2T29Q8NH02 315 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 ING5Q8WYH8 240 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 MRPL9Q9BYD2 267 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 POLR2J3Q9H1A7 115 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 FAM105AQ9NUU6 356 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 FBXW11Q9UKB1 542 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 IKZF2Q9UKS7 526 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 RPL36Q9Y3U8 105 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 FGF3P11487 239 aaPredicted RBP19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 OGNP20774 298 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 HTR7P34969 479 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 GGT5P36269 586 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 VGLL4Q14135 290 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 ASB18Q6ZVZ8 466 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 C17orf64Q86WR6 236 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 TMEM203Q969S6 136 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 KCNC2Q96PR1 638 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 HMGXB4Q9UGU5 601 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 YJEFN3A6XGL0 299 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 K7EPI3 171 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 RNASEH2AO75792 299 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 SLC2A7Q6PXP3 512 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 CDHR3Q6ZTQ4 885 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 KBTBD7Q8WVZ9 684 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 MUS81Q96NY9 551 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 PHOX2BQ99453 314 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 GBA2Q9HCG7 927 aaPredicted RBP19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 PAK6Q9NQU5 681 aaPredicted RBP19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 PSAT1Q9Y617 370 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 ZNF780BQ9Y6R6 833 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 PHLPP1O60346 1717 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 TPST2O60704 377 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 KDM4BO94953 1096 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 CRYBB1P53674 252 aaPredicted RBP19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 MAPK12P53778 367 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 DAOAP59103 153 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 SKP1P63208 163 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 PSMG2Q969U7 264 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 HMCESQ96FZ2 354 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 AASSQ9UDR5 926 aa19.2■□□□□ 0.66
CCDC88B-202ENST00000356786 A0A0X1KG70 313 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 OR10H2O60403 315 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 IFNA7P01567 189 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 MRPS6P82932 125 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 CSTF1Q05048 431 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 NCBP2-AS2Q69YL0 99 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 PIGKQ92643 395 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 FCRL5Q96RD9 977 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 ZNF347Q96SE7 839 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 FBRSL1Q9HCM7 1045 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 NDOR1Q9UHB4 597 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 A0A1W2PP18 115 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 SLC10A6Q3KNW5 377 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 FAM171BQ6P995 826 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 METTL3Q86U44 580 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 SNX33Q8WV41 574 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 AP2M1Q96CW1 435 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 PRR11Q96HE9 360 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 ITM2CQ9NQX7 267 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 GABRDO14764 452 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 C1RP00736 705 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 MAGEA8P43361 318 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 MAPK9P45984 424 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 ARSFP54793 590 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 SLC25A11Q02978 314 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 MAP1SQ66K74 1059 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 DNAJB8Q8NHS0 232 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 CLIP3Q96DZ5 547 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 KCTD7Q96MP8 289 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 GPR22Q99680 433 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 FAM124BQ9H5Z6 455 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 VIRMAQ69YN4 1812 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 A0A0G2JPF8 293 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 HNRNPCL3B7ZW38 293 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 HNRNPCL4P0DMR1 293 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 LAMP2P13473 410 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 LMO2P25791 158 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 FOXM1Q08050 763 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 FBXO43Q4G163 708 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 PHC2Q8IXK0 858 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 EXOSC8Q96B26 276 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 GALPQ9UBC7 116 aa19.19■□□□□ 0.66
CCDC88B-202ENST00000356786 PDE4DIPQ5VU43 2346 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms