RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 SSR2P43308 183 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 OR2T5Q6IEZ7 315 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 VSTM1Q6UX27 236 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 OR2T29Q8NH02 315 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 MTFMTQ96DP5 389 aaKnown RBP13.1□□□□□ -0.31
COL6A3-202ENST00000347401 TAAR1Q96RJ0 339 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 COQ10BQ9H8M1 238 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 ZNF69Q9UC07 566 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 CCRL2O00421 344 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 CLDN4O14493 209 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 PRKAG1P54619 331 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 SH3PXD2AQ5TCZ1 1133 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 SLC6A16Q9GZN6 736 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 PRDM12Q9H4Q4 367 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 SLC17A7Q9P2U7 560 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 RBMX2Q9Y388 322 aaKnown RBP13.1□□□□□ -0.31
COL6A3-202ENST00000347401 NDST3O95803 873 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 CLUP10909 449 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 GRK5P34947 590 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 CDKN2BP42772 138 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 PTGER3P43115 390 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 NFIXQ14938 502 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 MON1AQ86VX9 555 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 SLC13A3Q8WWT9 602 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 FLRT1Q9NZU1 646 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 BORCS7-ASMTA0A0B4J1R7 106 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 B4GALT4O60513 344 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 HCN1O60741 890 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 RENP00797 406 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 DDX6P26196 483 aaKnown RBP eCLIP13.1□□□□□ -0.31
COL6A3-202ENST00000347401 TSPAN33Q86UF1 283 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 SEC14L1Q92503 715 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 CEP295NLQ96MC4 621 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 MRI1Q9BV20 369 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 PBDC1Q9BVG4 233 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 IKZF2Q9UKS7 526 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 PLD2O14939 933 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 ADH6P28332 368 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 NADK2Q4G0N4 442 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 RNASEH2BQ5TBB1 312 aaKnown RBP13.1□□□□□ -0.31
COL6A3-202ENST00000347401 SLC22A10Q63ZE4 541 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 C10orf82Q8WW14 230 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 SLC39A1Q9NY26 324 aa13.1□□□□□ -0.31
COL6A3-202ENST00000347401 GNAO1P09471 354 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 ATP5A1P25705 553 aaKnown RBP13.09□□□□□ -0.31
COL6A3-202ENST00000347401 PSEN2P49810 448 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 XKP51811 444 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 DSG2Q14126 1118 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 DCDC5Q6ZRR9 648 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 GK5Q6ZS86 529 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 GPR65Q8IYL9 337 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 AVL9Q8NBF6 648 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 OR10H4Q8NGA5 316 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 ART5Q96L15 291 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 TMEM209Q96SK2 561 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 GRK6P43250 576 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 PTPN9P43378 593 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 MRPS5P82675 430 aaKnown RBP13.09□□□□□ -0.31
COL6A3-202ENST00000347401 PHYKPLQ8IUZ5 450 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 STON2Q8WXE9 905 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 SLA2Q9H6Q3 261 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 TECPR2O15040 1411 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 RIC1Q4ADV7 1423 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 PMM2O15305 246 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 CPNE3O75131 537 aaKnown RBP13.09□□□□□ -0.31
COL6A3-202ENST00000347401 HECTD2Q5U5R9 776 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 DUS1LQ6P1R4 473 aaKnown RBP13.09□□□□□ -0.31
COL6A3-202ENST00000347401 FIP1L1Q6UN15 594 aaKnown RBP13.09□□□□□ -0.31
COL6A3-202ENST00000347401 NUP54Q7Z3B4 507 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 CXorf40BQ96DE9 158 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 BTBD1Q9H0C5 482 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 SLC25A51Q9H1U9 297 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 AGO1Q9UL18 857 aaKnown RBP13.09□□□□□ -0.31
COL6A3-202ENST00000347401 N6AMT1Q9Y5N5 214 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 U3KQV3 271 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 CACNB4O00305 520 aaPredicted RBP13.09□□□□□ -0.31
COL6A3-202ENST00000347401 NTSR2O95665 410 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 PROZP22891 400 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 COL28A1Q2UY09 1125 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 IDNKQ5T6J7 187 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 DET1Q7L5Y6 550 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 PLPPR4Q7Z2D5 763 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 PLEKHH3Q7Z736 793 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 TRUB1Q8WWH5 349 aaKnown RBP13.09□□□□□ -0.31
COL6A3-202ENST00000347401 FAM163AQ96GL9 167 aaPredicted RBP13.09□□□□□ -0.31
COL6A3-202ENST00000347401 MRIQ9BWK5 157 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 POLR2J3Q9H1A7 115 aaKnown RBP13.09□□□□□ -0.31
COL6A3-202ENST00000347401 TAS2R3Q9NYW6 316 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 CMAHPQ9Y471 501 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 DOCK9Q9BZ29 2069 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 LOC100130705A0A1B0GUX0 176 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 LYPLA2O95372 231 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 IFNA2P01563 188 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 ACVR2AP27037 513 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 SEC23BQ15437 767 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 GALNT7Q86SF2 657 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 ILDR1Q86SU0 546 aaPredicted RBP13.09□□□□□ -0.31
COL6A3-202ENST00000347401 OTUB2Q96DC9 234 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 ATG4CQ96DT6 458 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 PNPOQ9NVS9 261 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms