RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 GLULP15104 373 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 HLA-FP30511 346 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 FOXN2P32314 431 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 TTKP33981 857 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 CCT8P50990 548 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 SLC34A1Q06495 639 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 TJAP1Q5JTD0 557 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 TBCELQ5QJ74 424 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 PRAMEF14Q5SWL7 426 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 PRAMEF13Q5VWM6 474 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 C11orf96Q7Z7L8 435 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 RFWD2Q8NHY2 731 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 LENG8Q96PV6 779 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 SLC38A3Q99624 504 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 RTKNQ9BST9 563 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 MYLK2Q9H1R3 596 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 SRMSQ9H3Y6 488 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 KRCC1Q9NPI7 259 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 GALPQ9UBC7 116 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 ENTPD2Q9Y5L3 495 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 FAM208BQ5VWN6 2430 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 OR51F1A6NGY5 319 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 MMP20O60882 483 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 KCNH1O95259 989 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 LAMP2P13473 410 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 MPSTP25325 297 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 ECHS1P30084 290 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 DUSP3P51452 185 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 C5orf22Q49AR2 442 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 RBM20Q5T481 1227 aaKnown RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 FAM92BQ6ZTR7 304 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 SLC44A2Q8IWA5 706 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 ZBED6CLQ96FA7 236 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 YIPF2Q9BWQ6 316 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 FANCEQ9HB96 536 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 PNPOQ9NVS9 261 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 ZIM2Q9NZV7 527 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 VPS29Q9UBQ0 182 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 EIF2B4Q9UI10 523 aaKnown RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 KCTD3Q9Y597 815 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 LRRC37AA6NMS7 1700 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 CXorf49A8MYA2 514 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 PRR5-ARHGAP8B1AHC4 643 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 SCELO95171 688 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 PSMA3P25788 255 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 PTX3P26022 381 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 HNF1BP35680 557 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 ARSDP51689 593 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 HNRNPKP61978 463 aaKnown RBP eCLIP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 ARHGAP19Q14CB8 494 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 DUSP6Q16828 381 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 CAPRIN2Q6IMN6 1127 aaKnown RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 UNC5DQ6UXZ4 953 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 DET1Q7L5Y6 550 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 RBM12BQ8IXT5 1001 aaKnown RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 KIAA2013Q8IYS2 634 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 CENPLQ8N0S6 344 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 FAM46DQ8NEK8 389 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 ITFG1Q8TB96 612 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 SETD7Q8WTS6 366 aaKnown RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 SLC13A3Q8WWT9 602 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 LYSMD1Q96S90 227 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 SLC17A9Q9BYT1 436 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 ZFHX2Q9C0A1 2572 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 TUBGCP6Q96RT7 1819 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 RHPN2P1A8MT19 583 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 HLA-EP13747 358 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 MAT2AP31153 395 aaKnown RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 GCKP35557 465 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 TRPC1P48995 793 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 TDGQ13569 410 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 LACTB2Q53H82 288 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 ZC3H12BQ5HYM0 836 aaKnown RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 TBC1D21Q8IYX1 336 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 DENND6BQ8NEG7 585 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 RBM18Q96H35 190 aaKnown RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF607Q96SK3 696 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 NFKBIL1Q9UBC1 381 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 GULP1Q9UBP9 304 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 LIMD1Q9UGP4 676 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 MRTO4Q9UKD2 239 aaKnown RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 LAMB2P55268 1798 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 SIN3BO75182 1162 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 FAM155BO75949 473 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 CSNK2A2P19784 350 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 MAPK12P53778 367 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 EPHA5P54756 1037 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 XIAPP98170 497 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 SHHQ15465 462 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 NEK10Q6ZWH5 1172 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 HEATR4Q86WZ0 1026 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 CNTN4Q8IWV2 1026 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 CYB5D2Q8WUJ1 264 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 FERD3LQ96RJ6 166 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 SLC22A12Q96S37 553 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 MECRQ9BV79 373 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 TXLNGYQ9BZA5 131 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 SGK2Q9HBY8 427 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 SPATA7Q9P0W8 599 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 DNMT3BQ9UBC3 853 aaKnown RBP6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms