RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 PROSER1Q86XN7 944 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 TBC1D21Q8IYX1 336 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 THUMPD3Q9BV44 507 aaKnown RBP17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 DPY30Q9C005 99 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 IKZF5Q9H5V7 419 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 DDX18Q9NVP1 670 aaKnown RBP17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 ZDHHC3Q9NYG2 299 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 FAM8A1Q9UBU6 413 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 PDE10AQ9Y233 779 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 KCNH1O95259 989 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 LDLRP01130 860 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 FCGR1AP12314 374 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 CCR2P41597 374 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 GNPDA1P46926 289 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 TMEM214Q6NUQ4 689 aaKnown RBP17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 TTC33Q6PID6 262 aaPredicted RBP17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 Q6ZVU0 165 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 VRK3Q8IV63 474 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 CBARPQ8N350 705 aaPredicted RBP17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 OR10A6Q8NH74 314 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 FIG4Q92562 907 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 ZBTB18Q99592 522 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 SH3GL3Q99963 347 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 HAUS8Q9BT25 410 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 BEGAINQ9BUH8 593 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 ACTR8Q9H981 624 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 CLK4Q9HAZ1 481 aaKnown RBP17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 LRTM1Q9HBL6 345 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 KCTD5Q9NXV2 234 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 PADI4Q9UM07 663 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 DMTF1Q9Y222 760 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 PCDHB3Q9Y5E6 796 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 A0A1B0GVG6 124 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 NEDD8-MDP1E9PL57 170 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 FGF18O76093 207 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 SNAP29O95721 258 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 EBLN1P0CF75 366 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 UMPSP11172 480 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 EPORP19235 508 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 BOP1Q14137 746 aaKnown RBP17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 MAPKAPK3Q16644 382 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 FAM86B1Q8N7N1 296 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 PAPD5Q8NDF8 572 aaKnown RBP17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 GTF2H4Q92759 462 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 ZNF583Q96ND8 569 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 TBCDQ9BTW9 1192 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 TMPRSS11EQ9UL52 423 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 ZNF510Q9Y2H8 683 aa17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 MAGED1Q9Y5V3 778 aaPredicted RBP17.96■□□□□ 0.47
SHKBP1-201ENST00000291842 DYTNA2CJ06 578 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 AGAP14A8MT82 685 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 SLC28A1O00337 649 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 ANXA5P08758 320 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 MSH3P20585 1137 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 PCSK6P29122 969 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 CLCN2P51788 898 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 WDR5P61964 334 aaKnown RBP17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 SLC36A3Q495N2 470 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 GTDC1Q4AE62 458 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 B3GNT6Q6ZMB0 384 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 FAM43BQ6ZT52 329 aaPredicted RBP17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 UBE2R2Q712K3 238 aaPredicted RBP17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 LMLNQ96KR4 655 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 LYSMD1Q96S90 227 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 NTMT1Q9BV86 223 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 BRD9Q9H8M2 597 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 B4GALT6Q9UBX8 382 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 MAGEL2Q9UJ55 1249 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 CEPT1Q9Y6K0 416 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 KANSL1LA0AUZ9 987 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 PDYNP01213 254 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 C1SP09871 688 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 CACHD1Q5VU97 1274 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 SERPINA13PQ6UXR4 307 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 SLC22A15Q8IZD6 547 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 ITFG1Q8TB96 612 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 ECHDC3Q96DC8 303 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 TCEAL4Q96EI5 215 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 TOX2Q96NM4 488 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 ACPTQ9BZG2 426 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 CARS2Q9HA77 564 aaKnown RBP17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 SLC6A13Q9NSD5 602 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 TMEM45AQ9NWC5 275 aa17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 ZNF106Q9H2Y7 1883 aaKnown RBP17.95■□□□□ 0.46
SHKBP1-201ENST00000291842 ABHD14A-ACY1A0A1B0GW23 586 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 CLOCKO15516 846 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 CLDN9O95484 217 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 B3GALT4O96024 378 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 PGRP06401 933 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 MYF6P23409 242 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 AKT1P31749 480 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 RPS9P46781 194 aaKnown RBP17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 FXNQ16595 210 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 OTOP2Q7RTS6 562 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 TRIM46Q7Z4K8 759 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 PHACTR4Q8IZ21 702 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 FBXO30Q8TB52 745 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 UBTD2Q8WUN7 234 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 SCAMP4Q969E2 229 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms