RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 LINGO4Q6UY18 593 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 CADM2Q8N3J6 435 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 NAT8LQ8N9F0 302 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 OR7D4Q8NG98 312 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 PNPT1Q8TCS8 783 aaKnown RBP18.83■□□□□ 0.6
UPF1-201ENST00000262803 FCRL4Q96PJ5 515 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 ANKHQ9HCJ1 492 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 POMPQ9Y244 141 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 PCDHGC4Q9Y5F7 938 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 YJEFN3A6XGL0 299 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 CD2P06729 351 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 DPYSL2Q16555 572 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 OTOP2Q7RTS6 562 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 LINC00471Q8N535 108 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 CLEC4CQ8WTT0 213 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 FCRL5Q96RD9 977 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 TCHHQ07283 1943 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 ILVBLA1L0T0 632 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 MAGEB17A8MXT2 336 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 UGT1A9O60656 530 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 RPS9P46781 194 aaKnown RBP18.82■□□□□ 0.6
UPF1-201ENST00000262803 ZNF800Q2TB10 664 aaPredicted RBP eCLIP18.82■□□□□ 0.64e-7■■■□□ 17.3
UPF1-201ENST00000262803 PAOXQ6QHF9 649 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 SLCO6A1Q86UG4 719 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 MCFD2Q8NI22 146 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 VANGL1Q8TAA9 524 aaPredicted RBP18.82■□□□□ 0.6
UPF1-201ENST00000262803 ZSCAN5AQ9BUG6 496 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 UGT1A7Q9HAW7 530 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 UGT1A10Q9HAW8 530 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 UGT1A8Q9HAW9 530 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 CRTAC1Q9NQ79 661 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.82■□□□□ 0.6
UPF1-201ENST00000262803 CELF5Q8N6W0 485 aaKnown RBP18.82■□□□□ 0.6
UPF1-201ENST00000262803 ARL14EPQ8N8R7 260 aaPredicted RBP18.82■□□□□ 0.6
UPF1-201ENST00000262803 FATE1Q969F0 183 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 KLHL32Q96NJ5 620 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 SAMD11Q96NU1 681 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 FARSBQ9NSD9 589 aaKnown RBP18.82■□□□□ 0.6
UPF1-201ENST00000262803 PIGRP01833 764 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 THRBP10828 461 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 FAM156AQ8NDB6 213 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 OR2AJ1Q8NGZ0 328 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 LRTOMTQ8WZ04 291 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 EBF4Q9BQW3 602 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 OSBPL2Q9H1P3 480 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 ARVCFO00192 962 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 WNT9AO14904 365 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 RENP00797 406 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 CRISP3P54108 245 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 GPM6BQ13491 265 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 QSOX2Q6ZRP7 698 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 MEIOBQ8N635 442 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 COX18Q8N8Q8 333 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 CENPNQ96H22 339 aaPredicted RBP18.82■□□□□ 0.6
UPF1-201ENST00000262803 ZNF541Q9H0D2 1346 aa18.82■□□□□ 0.6
UPF1-201ENST00000262803 WASHC1A8K0Z3 465 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 WASH3PC4AMC7 463 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 RBMXL2O75526 392 aaKnown RBP18.81■□□□□ 0.6
UPF1-201ENST00000262803 FADS2O95864 444 aaKnown RBP18.81■□□□□ 0.6
UPF1-201ENST00000262803 ZNF30P17039 623 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 CCR8P51685 355 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 KLHL22Q53GT1 634 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 WASH2PQ6VEQ5 465 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 FCGR1BQ92637 280 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 HBEGFQ99075 208 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 ERVK-11Q9UQG0 969 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 IL1R2P27930 398 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 PTPN5P54829 565 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 PAMR1Q6UXH9 720 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 NUDT13Q86X67 352 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 HDDC3Q8N4P3 179 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 CHID1Q9BWS9 393 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 WDR26Q9H7D7 661 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 MKKSQ9NPJ1 570 aaPredicted RBP18.81■□□□□ 0.6
UPF1-201ENST00000262803 IL36AQ9UHA7 158 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 NDRG2Q9UN36 371 aaKnown RBP18.81■□□□□ 0.6
UPF1-201ENST00000262803 EDDM13A0A1B0GTR0 161 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 WRBO00258 174 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 TRMUO75648 421 aaKnown RBP18.81■□□□□ 0.6
UPF1-201ENST00000262803 FSHRP23945 695 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 CLCN7P51798 805 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 AP1S2P56377 157 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 RPL19P84098 196 aaKnown RBP18.81■□□□□ 0.6
UPF1-201ENST00000262803 PRR23BQ6ZRT6 265 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 WRAP53Q9BUR4 548 aaKnown RBP18.81■□□□□ 0.6
UPF1-201ENST00000262803 TNKS2Q9H2K2 1166 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 RETREG1Q9H6L5 497 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 SDHAF3Q9NRP4 125 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 OR4F21O95013 312 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 RB1P06400 928 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 CCR10P46092 362 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 ALDH3A2P51648 485 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 LRRC70Q7Z2Q7 622 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 CMASQ8NFW8 434 aaPredicted RBP18.81■□□□□ 0.6
UPF1-201ENST00000262803 OR4C6Q8NH72 309 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 FAR1Q8WVX9 515 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 PSMG2Q969U7 264 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 MCUBQ9NWR8 336 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 ZNF222Q9UK12 451 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 PSMD11O00231 422 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms