RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 TMEM102Q8N9M5 508 aaPredicted RBP12.66□□□□□ -0.38
SPTLC1-201ENST00000262554 ITFG1Q8TB96 612 aa12.66□□□□□ -0.38
SPTLC1-201ENST00000262554 OSCP1Q8WVF1 389 aa12.66□□□□□ -0.38
SPTLC1-201ENST00000262554 ASB11Q8WXH4 323 aa12.66□□□□□ -0.38
SPTLC1-201ENST00000262554 SMG7Q92540 1137 aaKnown RBP12.66□□□□□ -0.38
SPTLC1-201ENST00000262554 TMEM125Q96AQ2 219 aa12.66□□□□□ -0.38
SPTLC1-201ENST00000262554 MUC13Q9H3R2 512 aa12.66□□□□□ -0.38
SPTLC1-201ENST00000262554 ZNF490Q9ULM2 529 aaPredicted RBP12.66□□□□□ -0.38
SPTLC1-201ENST00000262554 EIF3LQ9Y262 564 aaKnown RBP12.66□□□□□ -0.38
SPTLC1-201ENST00000262554 RNF11Q9Y3C5 154 aa12.66□□□□□ -0.38
SPTLC1-201ENST00000262554 CCL27Q9Y4X3 112 aa12.66□□□□□ -0.38
SPTLC1-201ENST00000262554 AQP12BA6NM10 295 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 C16orf96A6NNT2 1141 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 QSOX1O00391 747 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 MANBAO00462 879 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 HOXC11O43248 304 aaPredicted RBP12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 MTX2O75431 263 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 KRT6AP02538 564 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 KRT6BP04259 564 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 CAPNS1P04632 268 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 C7P10643 843 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 KRT6CP48668 564 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 RPL38P63173 70 aaKnown RBP12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 FOLH1Q04609 750 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 INPP5AQ14642 412 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 RFTN2Q52LD8 501 aaPredicted RBP12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 HENMT1Q5T8I9 393 aaKnown RBP12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 ERAP2Q6P179 960 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 TRIM46Q7Z4K8 759 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 UBE2Q1Q7Z7E8 422 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 RBM23Q86U06 439 aaKnown RBP12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 TICAM1Q8IUC6 712 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 AQP12AQ8IXF9 295 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 C7orf61Q8IZ16 206 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 DDHD1Q8NEL9 900 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 DNAJB14Q8TBM8 379 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 MCOLN3Q8TDD5 553 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 ELMO1Q92556 727 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 MIEF2Q96C03 454 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 ZBTB18Q99592 522 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 RIOK2Q9BVS4 552 aaKnown RBP12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 MTG2Q9H4K7 406 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 ACTR8Q9H981 624 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 ACTR3BQ9P1U1 418 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 DPPA5A6NC42 116 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 ZNF839A8K0R7 811 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 RNASEH1O60930 286 aaKnown RBP12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 ARHGEF15O94989 841 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 MYOGP15173 224 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 ATP6V1B2P21281 511 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 JAK1P23458 1154 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 GNPDA1P46926 289 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 AP1S2P56377 157 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 EEFSECP57772 596 aaKnown RBP12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 LDLRAP1Q5SW96 308 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 CACHD1Q5VU97 1274 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 LCN8Q6JVE9 175 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 PRR23BQ6ZRT6 265 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 GALNT13Q8IUC8 556 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 VRK3Q8IV63 474 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 DPP10Q8N608 796 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 GOLM1Q8NBJ4 401 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 ASZ1Q8WWH4 475 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 EME1Q96AY2 570 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 SLCO4A1Q96BD0 722 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 LRRC3BQ96PB8 259 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 KCTD14Q9BQ13 255 aaPredicted RBP12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 ALG2Q9H553 416 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 PDP2Q9P2J9 529 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 GMPR2Q9P2T1 348 aaKnown RBP12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 MBD1Q9UIS9 605 aaPredicted RBP12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 CNOT11Q9UKZ1 510 aaKnown RBP12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 RAB26Q9ULW5 256 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 SLC27A6Q9Y2P4 619 aa12.65□□□□□ -0.38
SPTLC1-201ENST00000262554 MYO7AQ13402 2215 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 GFYI3L273 518 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 ARNTLO00327 626 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 DENRO43583 198 aaKnown RBP12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 TULP3O75386 442 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 ELFN1P0C7U0 828 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 VARSP26640 1264 aaKnown RBP12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 MMP12P39900 470 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 POM121L1PQ3SYA9 428 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 SGO1Q5FBB7 561 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 TCEAL5Q5H9L2 206 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 RABL3Q5HYI8 236 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 SERPINA13PQ6UXR4 307 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 TECPR1Q7Z6L1 1165 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 C12orf40Q86WS4 652 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 ZNF366Q8N895 744 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 PIP4K2CQ8TBX8 421 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 BTN2A2Q8WVV5 523 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 LRTOMTQ8WZ04 291 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 USP7Q93009 1102 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 VPS35Q96QK1 796 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 UHRF1Q96T88 793 aaPredicted RBP12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 LRTM1Q9HBL6 345 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 FARSBQ9NSD9 589 aaKnown RBP12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 ARMC1Q9NVT9 282 aa12.64□□□□□ -0.39
SPTLC1-201ENST00000262554 EGFL7Q9UHF1 273 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms