RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 IPCEF1Q8WWN9 437 aaPredicted RBP12.79□□□□□ -0.36
MSH2-201ENST00000233146 SIPA1Q96FS4 1042 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 COA4Q9NYJ1 87 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.79□□□□□ -0.36
MSH2-201ENST00000233146 MAGEL2Q9UJ55 1249 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 PCOLCE2Q9UKZ9 415 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 ZCWPW2A0A1B0GU75 182 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 CST1P01037 141 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 APOC1P02654 83 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 CSF2P04141 144 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 TPOP07202 933 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 PRKACGP22612 351 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 GRIK2Q13002 908 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 TIGD6Q17RP2 521 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 TUSC1Q2TAM9 212 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 GPR158Q5T848 1215 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 HEATR6Q6AI08 1181 aaKnown RBP12.79□□□□□ -0.36
MSH2-201ENST00000233146 CAPN13Q6MZZ7 669 aaPredicted RBP12.79□□□□□ -0.36
MSH2-201ENST00000233146 BLOC1S3Q6QNY0 202 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 CCDC149Q6ZUS6 474 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 FAM124AQ86V42 546 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 NT5DC4Q86YG4 428 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 OR6M1Q8NGM8 313 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 ZNF669Q96BR6 464 aaPredicted RBP12.79□□□□□ -0.36
MSH2-201ENST00000233146 LINC00052Q96N35 136 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 PPP1R2P1Q96PQ5 205 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 SLC4A9Q96Q91 983 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 PIP5K1AQ99755 562 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 HPF1Q9NWY4 346 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 CDH9Q9ULB4 789 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 TMEM5Q9Y2B1 443 aa12.79□□□□□ -0.36
MSH2-201ENST00000233146 PDE9AO76083 593 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 HSD17B2P37059 387 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 ARHGDIBP52566 201 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 CDH17Q12864 832 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 ZNF169Q14929 603 aaPredicted RBP12.78□□□□□ -0.36
MSH2-201ENST00000233146 FAM219BQ5XKK7 198 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 TMEM179BQ7Z7N9 219 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 ARRDC4Q8NCT1 418 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 WBP1Q96G27 269 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 AKTIPQ9H8T0 292 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 CARS2Q9HA77 564 aaKnown RBP12.78□□□□□ -0.36
MSH2-201ENST00000233146 BRD7Q9NPI1 651 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 CD274Q9NZQ7 290 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 VPS9D1Q9Y2B5 631 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 WASHC1A8K0Z3 465 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 ANKRD28O15084 1053 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 ATP5F1P24539 256 aaPredicted RBP12.78□□□□□ -0.36
MSH2-201ENST00000233146 RPL35P42766 123 aaKnown RBP12.78□□□□□ -0.36
MSH2-201ENST00000233146 SNAP25P60880 206 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 GPR68Q15743 365 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 HTR3DQ70Z44 454 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 TMEM135Q86UB9 458 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 SORCS2Q96PQ0 1159 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 QKIQ96PU8 341 aaKnown RBP eCLIP12.78□□□□□ -0.366e-6■■■■■ 32.9
MSH2-201ENST00000233146 SMURF1Q9HCE7 757 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 KCNMB2Q9Y691 235 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 PPP6CO00743 305 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 SYN3O14994 580 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 RECQL5O94762 991 aaPredicted RBP12.78□□□□□ -0.36
MSH2-201ENST00000233146 LDOC1O95751 146 aaPredicted RBP12.78□□□□□ -0.36
MSH2-201ENST00000233146 ALDH1A1P00352 501 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 NRIP1P48552 1158 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 YWHAEP62258 255 aaKnown RBP12.78□□□□□ -0.36
MSH2-201ENST00000233146 USP10Q14694 798 aaKnown RBP12.78□□□□□ -0.36
MSH2-201ENST00000233146 FLYWCH1Q4VC44 716 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 KLHL12Q53G59 568 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 MAP1SQ66K74 1059 aaPredicted RBP12.78□□□□□ -0.36
MSH2-201ENST00000233146 TRILQ7L0X0 811 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 DTWD1Q8N5C7 304 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 ENKURQ8TC29 256 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 PELOQ9BRX2 385 aaKnown RBP12.78□□□□□ -0.36
MSH2-201ENST00000233146 TSEN34Q9BSV6 310 aaKnown RBP12.78□□□□□ -0.36
MSH2-201ENST00000233146 TEKT3Q9BXF9 490 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 ELOVL6Q9H5J4 265 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 PIF1Q9H611 641 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 IL1RAPQ9NPH3 570 aa12.78□□□□□ -0.36
MSH2-201ENST00000233146 CUEDC1Q9NWM3 386 aaPredicted RBP12.78□□□□□ -0.36
MSH2-201ENST00000233146 TRAV20A0A0B4J274 112 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 ASPDHA6ND91 283 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 NEMP2A6NFY4 417 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 NUPL2O15504 423 aaKnown RBP12.77□□□□□ -0.36
MSH2-201ENST00000233146 SSX5O60225 188 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 RGS20O76081 388 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 SAT1P21673 171 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 CD72P21854 359 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 AZGP1P25311 298 aaKnown RBP12.77□□□□□ -0.36
MSH2-201ENST00000233146 AVPR1AP37288 418 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 DCTP40126 519 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 ZNF143P52747 638 aaPredicted RBP12.77□□□□□ -0.36
MSH2-201ENST00000233146 HUNKP57058 714 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 KCNK10P57789 538 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 RRAS2P62070 204 aaPredicted RBP12.77□□□□□ -0.36
MSH2-201ENST00000233146 ERVK-8P63133 956 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 DAB2P98082 770 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 KEAP1Q14145 624 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 USP50Q70EL3 339 aaPredicted RBP12.77□□□□□ -0.36
MSH2-201ENST00000233146 COLGALT1Q8NBJ5 622 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 OR5K1Q8NHB7 308 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 COPS5Q92905 334 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms