RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 GABRB1P18505 474 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 TLX1P31314 330 aaPredicted RBP3.53□□□□□ -1.84
CD44-239ENST00000639002 MAGEA11P43364 429 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 TRIM65Q6PJ69 517 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 SARM1Q6SZW1 724 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 P2RY8Q86VZ1 359 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 PDILTQ8N807 584 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 ERLEC1Q96DZ1 483 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 MAGED4Q96JG8 741 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 CMTM3Q96MX0 182 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 C16orf70Q9BSU1 422 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 ITPAQ9BY32 194 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 VN1R1Q9GZP7 353 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 ATP13A3Q9H7F0 1226 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 DNAJC18Q9H819 358 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 SMC4Q9NTJ3 1288 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 FBXL17Q9UF56 701 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 KLK13Q9UKR3 277 aa3.53□□□□□ -1.84
CD44-239ENST00000639002 TPPPO94811 219 aa3.52□□□□□ -1.85
CD44-239ENST00000639002 CLDN1O95832 211 aa3.52□□□□□ -1.85
CD44-239ENST00000639002 TBX18O95935 607 aa3.52□□□□□ -1.85
CD44-239ENST00000639002 ZSCAN5DPP0CG00 497 aa3.52□□□□□ -1.85
CD44-239ENST00000639002 LAMP2P13473 410 aa3.52□□□□□ -1.85
CD44-239ENST00000639002 CA4P22748 312 aa3.52□□□□□ -1.85
CD44-239ENST00000639002 PON1P27169 355 aa3.52□□□□□ -1.85
CD44-239ENST00000639002 GLIPR1L2Q4G1C9 344 aa3.52□□□□□ -1.85
CD44-239ENST00000639002 KLHL26Q53HC5 615 aa3.52□□□□□ -1.85
CD44-239ENST00000639002 SNX30Q5VWJ9 437 aa3.52□□□□□ -1.85
CD44-239ENST00000639002 ARID3BQ8IVW6 561 aaPredicted RBP3.52□□□□□ -1.85
CD44-239ENST00000639002 OMA1Q96E52 524 aa3.52□□□□□ -1.85
CD44-239ENST00000639002 PPM1MQ96MI6 270 aa3.52□□□□□ -1.85
CD44-239ENST00000639002 P2RY12Q9H244 342 aa3.52□□□□□ -1.85
CD44-239ENST00000639002 SDR39U1Q9NRG7 319 aaPredicted RBP3.52□□□□□ -1.85
CD44-239ENST00000639002 ZNF701Q9NV72 531 aaPredicted RBP3.52□□□□□ -1.85
CD44-239ENST00000639002 ERAP1Q9NZ08 941 aa3.52□□□□□ -1.85
CD44-239ENST00000639002 RHCGQ9UBD6 479 aa3.52□□□□□ -1.85
CD44-239ENST00000639002 LRWD1Q9UFC0 647 aa3.52□□□□□ -1.85
CD44-239ENST00000639002 CSAG2Q9Y5P2 127 aa3.52□□□□□ -1.85
CD44-239ENST00000639002 CROCCQ5TZA2 2017 aa3.52□□□□□ -1.85
CD44-239ENST00000639002 TPD52L2O43399 206 aaKnown RBP3.51□□□□□ -1.85
CD44-239ENST00000639002 PRKRAO75569 313 aaKnown RBP3.51□□□□□ -1.85
CD44-239ENST00000639002 EIF3JO75822 258 aaKnown RBP3.51□□□□□ -1.85
CD44-239ENST00000639002 RSL1D1O76021 490 aaKnown RBP3.51□□□□□ -1.85
CD44-239ENST00000639002 PRLRP16471 622 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 MAPK4P31152 587 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 SUOXP51687 545 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 PLA2G7Q13093 441 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 DRP2Q13474 957 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 MELKQ14680 651 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 FASTKD1Q53R41 847 aaKnown RBP3.51□□□□□ -1.85
CD44-239ENST00000639002 ZNF343Q6P1L6 599 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 Q6ZRP5 223 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 SMC5Q8IY18 1101 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 TMTC2Q8N394 836 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 WDTC1Q8N5D0 677 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 NAXEQ8NCW5 288 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 RNF128Q8TEB7 428 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 FOXN4Q96NZ1 517 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 FNBP1Q96RU3 617 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 NCAPGQ9BPX3 1015 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 C1QTNF1Q9BXJ1 281 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 CLEC7AQ9BXN2 247 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 SLC26A6Q9BXS9 759 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 AMACRQ9UHK6 382 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 SESN1Q9Y6P5 492 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 ZHX2Q9Y6X8 837 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 OBSCNQ5VST9 7968 aa3.51□□□□□ -1.85
CD44-239ENST00000639002 TDRD9Q8NDG6 1382 aaKnown RBP3.51□□□□□ -1.85
CD44-239ENST00000639002 A0A1W2PN81 502 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 HEPACAM2A8MVW5 462 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 B4E171 279 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 CHRNA7P36544 502 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 HNF4AP41235 474 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 TSPAN7P41732 249 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 SLC8A3P57103 927 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 SNRPEP62304 92 aaKnown RBP3.5□□□□□ -1.85
CD44-239ENST00000639002 PRAMEP78395 509 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 MPP1Q00013 466 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 DMPKQ09013 629 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 UGP2Q16851 508 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 MDH1BQ5I0G3 518 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 TICAM1Q8IUC6 712 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 PRSS33Q8NF86 280 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 MORC4Q8TE76 937 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 POMGNT1Q8WZA1 660 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 DYRK2Q92630 601 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 NSL1Q96IY1 281 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 PIGQQ9BRB3 760 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 FUCA2Q9BTY2 467 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 KAT14Q9H8E8 782 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 DIAPH3Q9NSV4 1193 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 OSGIN1Q9UJX0 560 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 MTUS1Q9ULD2 1270 aa3.5□□□□□ -1.85
CD44-239ENST00000639002 EPM2AB3EWF7 344 aa3.49□□□□□ -1.85
CD44-239ENST00000639002 KLF11O14901 512 aa3.49□□□□□ -1.85
CD44-239ENST00000639002 ACADSP16219 412 aa3.49□□□□□ -1.85
CD44-239ENST00000639002 PRKCZQ05513 592 aa3.49□□□□□ -1.85
CD44-239ENST00000639002 ZNF774Q6NX45 483 aa3.49□□□□□ -1.85
CD44-239ENST00000639002 PAQR6Q6TCH4 344 aa3.49□□□□□ -1.85
CD44-239ENST00000639002 MMS22LQ6ZRQ5 1243 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms